Method for screening small-molecule inhibitors by taking cathepsin D as target point
A small molecule inhibitor, cathepsin technology, applied in special data processing applications, instruments, electrical digital data processing, etc., can solve the problems of low success rate, long cycle, high cost, etc., and achieve the effect of improving efficiency
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[0065] To screen for small molecule inhibitors targeting cathepsin D, proceed as follows,
[0066] (1) Acquisition, analysis and processing of the three-dimensional structure of cathepsin D protein;
[0067] Search and obtain the three-dimensional structure of cathepsin D protein (PDB code: 1LYB) in the protein database (http: / / www.rcsb.org), which is a complex of cathepsin D protein and its inhibitor PepstatinA; use Schrödinger software Package maestro 10.1 (2015-01, version 10.1, http: / / www. com) Protein preparation wizard module to prepare, first hydrogenate the protein, and delete water molecules, α-mannose, β-mannose, N-acetyl-D-glucosamine in the protein, and then in the OPLS2005 force field conditions The energy optimization of the protein is carried out, and the RMSD of the heavy atoms in the final crystal structure is less than
[0068] (2) Construction and processing of small molecule ligand libraries for docking;
[0069] Obtain and filter out molecules with a...
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