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S1m1 Gene Fragment as a SNP Molecular Marker Related to Bone Density in Sow Limbs and Hooves

A molecular marker, S1M1 technology, applied in DNA/RNA fragmentation, recombinant DNA technology, microbial determination/inspection, etc., can solve the problems of limited application, high price, rare livestock skeleton research, etc., achieving good specificity and high sensitivity Effect

Active Publication Date: 2020-01-14
HUAZHONG AGRI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

It can be seen that bone density is an important indicator in the study of animal bone strength, but due to the limitations of various production conditions, people's research on livestock bones is very rare
[0004] Bone mineral density, that is, the content of bone mineral per unit volume, the unit is g / cm3, common bone density measurement methods include radioabsorption method, dual-energy X-ray measurement method, quantitative computed tomography technology and axial ultrasonic transmission technology, etc. (Cao Jian. Application evaluation of bone mineral density (BMD) measurement[J]. Frontiers of Medicine, 2013(2).), among which dual-energy X-ray measurement and quantitative computed tomography technology are the most widely used, but dual-energy X-ray measurement technology It is area bone density, which is affected by the geometric volume of the object, and quantitative computed tomography technology can measure animal bone density more accurately, but its equipment is expensive (Liu Jun, dual-energy X-ray bone density instrument and quantitative CT to measure bone density [D], Journal of Central South University, 2005), and the operation is very troublesome (for large livestock, it needs to be performed after anesthesia), which greatly limits its application in animal bone density research

Method used

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  • S1m1 Gene Fragment as a SNP Molecular Marker Related to Bone Density in Sow Limbs and Hooves
  • S1m1 Gene Fragment as a SNP Molecular Marker Related to Bone Density in Sow Limbs and Hooves
  • S1m1 Gene Fragment as a SNP Molecular Marker Related to Bone Density in Sow Limbs and Hooves

Examples

Experimental program
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Effect test

Embodiment 1

[0024] Example 1: Genotyping Detection

[0025] (1) Genomic DNA was extracted from ear tissues of porcine bone density-related populations using the kit method

[0026] 1) Cut the ear-like tissue of bone density-related groups (this group includes Danish (Denmark) Large White pigs and Landrace pigs, which are conventional breeds, provided by Guangxi Yangxiang Co., Ltd.) with ophthalmic scissors until it becomes a paste, and add 200ulGA (included with the kit), and shake to mix; then put it into a 56°C water bath for overnight digestion.

[0027] 2) Add 200ul buffer GB (included with the kit) to the digested tissue sample, mix thoroughly by inversion, and place at 70°C for 10 minutes, the solution should become clear, and centrifuge briefly to remove water droplets on the tube wall.

[0028] 3) Add 200ul of absolute ethanol, shake and mix well for 15 seconds, at this time flocculent precipitation may appear, briefly centrifuge to remove water droplets on the tube wall.

[002...

Embodiment 2

[0036] Example 2: Application of the molecular marker typing method screened by the present invention in the association analysis of bone density traits of pig limbs and hooves (1) Association analysis of molecular marker typing results and bone density traits of limbs and hooves

[0037] The experimental pigs used for the correlation detection and analysis of genotype and bone density traits of limbs and hooves come from purebred sow groups bred by Guangxi Yangxiang Co., Ltd., including Large White pigs and Landrace pigs (conventional breeds). The DNA used for genotyping is extracted from the ear samples of purebred Large White pigs and Landrace pigs ("Purebred Large White and Landrace" referred to in the text of the instructions and tables are referred to as "pigs" for short). Using the method based on the single-marker association regression model, using the gender of the individual as a fixed effect, the GWAS analysis was performed using the GenABEL software package in the ...

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Abstract

The invention belongs to the technical field of animal molecular marking and screening and particularly relates to an S1M1 gene fragment as an SNP (single-nucleotide polymorphism) molecular marker associated with sow foot-leg bone mineral density. The molecular marker is cloned from the S1M1 gene fragment having the register number of ASGA0003306; the gene fragment is subjected to typing screeningvia a gene chip technology so as to obtain the molecular marker associated with sow foot-leg bone mineral density; a nucleotide sequence of the molecular marker is shown as in SEQ ID NO: 1; base 51 of the nucleotide sequence has a C / T allele mutation; when nucleotide 51 in the SEQ ID NO: 1 is T, sow leg-foot bone has higher bone mineral density. Disclosed a method of screening molecular markers associated with sow pig-leg bone mineral density, as well as application of association analytical method. The novel SNP molecular marker is provided for marking-assisted selection of pig leg-foot compactness traits, particularly bone mineral density.

Description

technical field [0001] The invention relates to the technical field of porcine molecular marker preparation, in particular to S1M1 gene as a SNP molecular marker related to sow limb and hoof bone density. The molecular markers described in the present invention can be used to predict the bone density traits of pig limbs and hooves. Background technique [0002] With the development of science and technology, the pig breeding industry has made significant breakthroughs in genetic breeding, nutritional regulation, and disease prevention and control. The lean meat rate, feed-to-meat ratio, and growth rate of commercial pigs have all been greatly improved. However, with intensive farming comes the increasingly prominent problem of limbs and feet. For intensive production, the range of activities of pigs is limited. In addition, the design of pens (slatted floors) has exacerbated the occurrence of pigs' limbs and feet. It has been reported that 20-50% of all gilts passed the per...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/6888C12N15/11
CPCC12Q1/6888C12Q2600/124C12Q2600/156
Inventor 刘向东冯帅飞周玉叶灯灯马官军尹立林唐振双赵书红刘小磊
Owner HUAZHONG AGRI UNIV
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