Microhaplotype genetic marker for forensic detection and kit thereof
A genetic marker and kit technology, applied in the field of forensic medicine, can solve the problems of inability to analyze, high quality requirements, unbalanced allele amplification, etc.
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Embodiment 1 1
[0070] Example 1 A group of genetic marker combinations
[0071] This embodiment lists a group of genetic marker combinations, the genetic marker combinations include 22 micro-haplotypes respectively located on 22 human autosomes, the SNP loci of the 22 micro-haplotypes are composed and The chromosome number where it is located is: the SNP site is named after the rs number in the SNP database of the National Center for Biotechnology Information:
[0072] Micro-haplotype 1: rs6688242, rs2796542, rs6688263 and rs11206895, a total of 4 SNP sites, on Chr1;
[0073] Micro-haplotype 2: rs3771843, rs3821317, rs17640500, rs10194954, rs10207441, rs3771844, a total of 6 SNP sites on Chr2;
[0074] Micro-haplotype 3: rs496999, rs497931, rs623776, a total of 3 SNP sites, on Chr3;
[0075] Micro-haplotype 4: rs10028632, rs9995529, rs10028725, rs10028726, rs10028792, a total of 5 SNP sites on Chr4;
[0076] Micro-haplotype 5: rs7722440, rs6555369, rs6555370, rs11420883, a total of 4 SNP ...
Embodiment 2
[0094] Embodiment 2 A kind of compound amplification system
[0095] In this embodiment, the complex amplification system includes: 22 sets of primers for amplifying the above-mentioned 21 micro-haplotypes and Amelogenin loci and the concentration of each set of primers in the amplification system.
[0096] In this embodiment, 22 sets of primers and their primer concentrations as shown in Table 3 are used to simultaneously multiplex and amplify the 21 micro-haplotypes and Amelogenin loci in Example 1, so that all 21 micro-haplotypes and Amelogenin loci All were amplified and all were amplified with relatively consistent amplification efficiencies.
[0097] table 3
[0098]
Embodiment 4
[0115] Example 4 Frequency Calculation of Micro-haplotype Markers
[0116] Since the above micro-haplotypes are independently developed and designed, there is no corresponding frequency information, so the frequencies of these markers need to be calculated first.
[0117] The calculation method is:
[0118] (1) DNA extraction: DNeasy Blood & Tissue Kit was used to extract the whole genome DNA of 50 unrelated individuals.
[0119] (2) Multiplex PCR amplification: The multiplex amplification system constructed by the present invention is used to perform multiplex PCR amplification on the extracted DNA.
[0120] (3) Library construction and next-generation sequencing: Purify the PCR products, and use the KAPA LTP Library Preparation Kit kit to build a library of the purified PCR products. After the library inspection is qualified, use the MiSeq sequencer for sequencing.
[0121] (4) Next-generation sequencing data analysis: perform quality control on the fastq files obtained by...
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