Application and method of imp gene in preparation of kit for detecting Riemerella anatipestifer serotype 1

A technique for detecting Riemerella anatipestifer, which is applied in the field of livestock and poultry detection, can solve the problems of economic loss, time-consuming and laborious, and confusion of Escherichia coli and Pasteurella in the duck farming industry.

Active Publication Date: 2021-07-06
SICHUAN AGRI UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

The disease is prevalent in almost all duck raising areas in the world, causing huge economic losses to the duck industry
The traditional identification of RA usually detects phenotypic indicators such as its cultural characteristics, morphological staining, physiological and biochemical characteristics, and certain chemical compositions of the bacteria. so confused
In addition, the traditional identification method is complicated to operate, time-consuming and laborious, which is not conducive to timely diagnosis of the cause, inspection of the pathogen and control of the spread of the disease
Aiming at these characteristics of Riemerella anatipestifer, many researchers have established some detection techniques, such as fluorescent antibody technique, ELLSA, immunohistochemistry, etc., which have been reported successively, but in practice, they all have different degrees of limitations, such as the need to target different serum type of antibody as a detection reagent

Method used

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  • Application and method of imp gene in preparation of kit for detecting Riemerella anatipestifer serotype 1
  • Application and method of imp gene in preparation of kit for detecting Riemerella anatipestifer serotype 1
  • Application and method of imp gene in preparation of kit for detecting Riemerella anatipestifer serotype 1

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Experimental program
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Embodiment 1

[0022] Embodiment 1, the establishment of the method for detecting Riemerella anatipestifer serotype 1 by reverse hybridization with PNA probe

[0023] Design of primer pairs for specific amplification of Riemeria anatipestifer and PNA probes for specific hybridization of serotype 1 Riemeria anatipestifer: through bioinformatics analysis, found from the genomic DNA sequence of Riemeria anatipestifer Imp gene, Imp is highly conserved in other Gram-negative bacteria, and has a variety of important biological functions. In addition to participating in the process of lipopolysaccharide export and assembly to the outer membrane, it is also involved in the formation of the bacterial envelope and the tolerance of bacterial organic solvents related. It is used as the detection target gene of serotype 1 Riemerella anatipestifer, and the gene sequence is shown in SEQ ID NO.1.

[0024] (1) Primer and PNA probe design

[0025] According to the Imp gene sequence, primers with a product s...

Embodiment 2

[0044] Embodiment 2, PNA reverse hybridization detection method specificity evaluation experiment

[0045] According to the DNA template extraction method and the PNA probe reverse hybridization detection method in Implementation 1, Escherichia coli, Pasteurella, Salmonella, and multiple serotypes of Riemeria anatipestifer strains (preserved strains, unknown serotypes or serological Test to identify the serotype of Riemeria anatipestifer clinical isolates, as shown in Table 1) for detection.

[0046] For the detection results of the PNA probe reverse hybridization specificity experiment, see figure 1 And Table 1, only Riemerella anatipestifer serotype 1 appeared green fluorescent spots.

[0047] Table 1. PNA probe reverse hybridization specificity evaluation used strains and detection results

[0048] Strain number Deposit number or identified clinical isolates Strain name and serotype Test results RA CH-1 (RCH) CCTCC NO.M2017702 Riemerella anatipest...

Embodiment 3

[0050] Example 3, PNA reverse hybridization detection Riemerella anatipestifer serotype 1 sensitivity evaluation experiment

[0051] The initial concentration of the PNA probe was 50 μM, and the 2-fold gradient dilution was performed with sterile water, and a total of 10 gradients were diluted, and 2 μl was taken from each gradient for probe immobilization, and reverse hybridization detection was performed according to the steps in Example 1, as shown in figure 2 shown. Depend on figure 2 It can be seen that fluorescent spots can be seen in Figure 5 (corresponding to a PNA probe concentration of 3.1 μM), and clear fluorescent spots can be seen in Figure 4 (corresponding to a PNA probe concentration of 6.2 μM), which has extremely high sensitivity .

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Abstract

The present invention relates to the application and method of an Imp gene in the preparation of a kit for detecting Riemeria anatipestifer serotype 1. The specific steps are as follows: according to the Imp gene sequence SEQ ID NO.1 in the Riemeria anatipestifer genome DNA sequence Design the amplification primer pair sequence SEQ ID NO.2 and SEQ ID NO.3, add FAM fluorescent markers at the 5' and 3' ends at the same time, extract sample DNA, and amplify by PCR; DNA recovery kit for liquid recovery PCR amplification Store the product in the dark at ‑20°C for later use; use PNA synthesized with the sequence SEQ ID NO.4 as a probe for reverse hybridization, observe under a fluorescent microscope, if green fluorescent spots appear, it is the serum of Riemeria anatipestifer Type 1; if no green fluorescent spots appear, it is other strains. The detection method of the invention is used to detect the Riemerella anatipestifer serotype 1, and the detection time is short, the cost is low, the detection result is specific, and the result determination is simple.

Description

technical field [0001] The invention belongs to the field of livestock and poultry detection, and relates to a kit for detecting Riemerella anatipestifer serotype 1 by reverse hybridization using a PNA probe, and also relates to a detection method using the kit. Background technique [0002] Riemerella anatipestifer (RA) is the causative bacterium of infectious serositis in ducks, which is one of the most important diseases that endanger the duck industry. The disease is an acute or chronic sepsis process, characterized by fibrinous pericarditis, perihepatitis, air sac inflammation, meningitis, and some caseous salpingitis and arthritis. The morbidity rate is 10%-90%, and the case fatality rate is as high as 80%, which can occur throughout the year. The disease is prevalent in almost all duck raising areas in the world, causing huge economic losses to the duck industry. The traditional identification of RA usually detects phenotypic indicators such as its cultural characte...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/689C12Q1/04C12Q1/6813
CPCC12Q1/6813C12Q1/689C12Q2531/113C12Q2563/107
Inventor 程安春邱浩汪铭书
Owner SICHUAN AGRI UNIV
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