Human sequencing sample tracking marker, and monitoring method and monitoring device for cross contamination of human sequencing sample

A cross-contamination and monitoring device technology, applied in the biological field, can solve the problems of increasing a lot of work, complicated preparation process, and many steps, and achieve the effect of ensuring accuracy

Active Publication Date: 2020-11-17
天津诺禾医学检验所有限公司
View PDF3 Cites 2 Cited by
  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0008] Comparing sample information through bioinformatics to determine whether the sample contains biological information of other samples, this method increases a lot of work and cost, and prolongs the project cycle, affecting clinical medical disease monitoring and screening
In addition, the sensitivity and sensitivity of these methods have certain limitations. It is impossible to clearly identify the reversed and exchanged samples. It can only provide the complete situation of the confirmed samples, and it is impossible to judge whether the sequencing data corresponds to the original sample.
[0009] By marking the original sample, the marker can flow along with the original sample throughout the sequencing process, and the original sample can be determined according to the marker information detected in the sequencing data. This method adds a lot of complexity due to the complicated preparation process of most markers. It cannot be applied to the sequencing process on a large scale; and because the sequencing process involves many steps and the process is complicated, the amount of markers cannot be clearly controlled, so it is impossible to accurately measure cross-contamination between samples based on the quantitative relationship between the amount of markers. judgment

Method used

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
View more

Image

Smart Image Click on the blue labels to locate them in the text.
Viewing Examples
Smart Image
  • Human sequencing sample tracking marker, and monitoring method and monitoring device for cross contamination of human sequencing sample
  • Human sequencing sample tracking marker, and monitoring method and monitoring device for cross contamination of human sequencing sample
  • Human sequencing sample tracking marker, and monitoring method and monitoring device for cross contamination of human sequencing sample

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0045] Examples of markers

[0046] Select the 80bp sequence in the genome sequence of Methanococcus jannazii, which needs to have no similarity with the human genome sequence, and use HPLC to purify after synthesis. Example markers are as follows in Table 1:

[0047] Table 1

[0048]

[0049] After mixing and diluting the synthesized forward and reverse strands at a ratio of 1:1, markers that can be used in subsequent experiments were obtained.

[0050] Human DNA samples, human blood samples, and human oral swab samples were selected. A certain amount of markers were added to the blood and oral swab samples after extraction and sub-sampling. Nucleic acid samples were directly added, and samples without added markers were used as the control group to construct The human exome library is sequenced to detect whether there is an added marker sequence in the off-machine data and the proportional relationship between the marker sequence and the sample sequence reads; and build ...

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to view more

PUM

No PUM Login to view more

Abstract

The invention discloses a human sequencing sample tracking marker, and a monitoring method and a monitoring device for cross contamination of a human sequencing sample. The sequence of the marker is derived from Methanococcus jannaschii, and is not matched with a comparison result of a human reference genome sequence. The sequence of the human sequencing sample tracking marker is derived from Methanococcus jannaschii, and is not matched with the comparison result of the human reference genome sequence, so that the marker can be better tracked. Furthermore, through a double-quality control system in two aspects of the tracking marker and a cross contamination model, whether the sample is subjected to reverse exchange and cross contamination or not can be sensitively detected on the basis ofincreasing a small amount of cost and operation to the maximum extent, the sample is identified and subjected to quality control, and the accuracy of sequencing data is ensured.

Description

technical field [0001] The invention relates to the field of biotechnology, in particular to a tracking marker for human sequencing samples, a monitoring method and a monitoring device for cross-contamination of human sequencing samples. Background technique [0002] Based on the dideoxy chain termination method (Sanger method) sequencing, next-generation sequencing technology (NGS) realizes multi-channel sequencing of multiple nucleic acid molecules at the same time, making sequencing toward high-throughput, low-cost, high-safety and commercial It has important applications in molecular biology, clinical medicine, disease screening and detection, etc., and provides a powerful platform for the study of pathogenic genes at the molecular level. But at the same time, next-generation sequencing technology needs to process a large number of samples at the same time, and perform standardized library construction operations in a unified manner. This process inevitably increases the...

Claims

the structure of the environmentally friendly knitted fabric provided by the present invention; figure 2 Flow chart of the yarn wrapping machine for environmentally friendly knitted fabrics and storage devices; image 3 Is the parameter map of the yarn covering machine
Login to view more

Application Information

Patent Timeline
no application Login to view more
Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/11C12Q1/6869G16B20/20G16B20/30G16B5/00
CPCC12Q1/6869G16B20/20G16B20/30G16B5/00C12Q2535/122C12Q2537/165Y02A90/10
Inventor 姚佳玥刘文彬李艳萍许洪柱高长欣吴国营
Owner 天津诺禾医学检验所有限公司
Who we serve
  • R&D Engineer
  • R&D Manager
  • IP Professional
Why Eureka
  • Industry Leading Data Capabilities
  • Powerful AI technology
  • Patent DNA Extraction
Social media
Try Eureka
PatSnap group products