Probe, primer group and kit for detecting helicobacter pylori
A Helicobacter pylori and kit technology, applied in the biological field, can solve problems such as increasing medical burden, achieve low requirements, optimize reaction system and conditions, and save time
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Embodiment 1
[0038] The purpose of this example is to provide test materials.
[0039] 1.1 Standard strains and clinical samples
[0040] The ATCC Hp26695 standard strain was preserved by the department, and the gastric mucosa samples were from a hospital in Linfen.
[0041] 1.2 Primers and probes
[0042] Through the comparison and analysis of the known Helicobacter pylori nucleotide sequences in GenBank, a conserved region on ureI of Helicobacter pylori was found as the target gene. The screening of this gene was derived from the sequencing analysis of 80 strains from national sources by Linfen People's Hospital, and these strains represent the epidemic strains in China. Meanwhile, in this embodiment, human β-actin (β-actin) is selected as an internal reference gene. β-actin gene is often used as an internal reference gene for detecting pathogenic microorganisms from human specimens. The specific primer probe sequences used in this example are shown in Table 1, wherein the 5-end of u...
Embodiment 2
[0064] The purpose of this example is to optimize the multiplex real-time fluorescent quantitative PCR reaction system and reaction conditions of ureI and β-actin.
[0065] The Taq enzyme (5U / μl) of QIAGEN was selected as the reaction enzyme, and the optimal reaction system (25 μl) of the enzyme is shown in Table 2:
[0066] Table 2
[0067]
[0068]
[0069] Reaction conditions: 95°C for 5 minutes, 95°C for 15s, 60°C for 45s (collecting fluorescence), a total of 40 cycles.
[0070] Interpretation of results: samples with a Ct value less than or equal to 35 are positive results; samples with a Ct value greater than 35 are negative results; samples with a Ct value between 35 and 40 need to be repeated, and if the Ct value is still lower than 40 in repeated tests, it is judged as positive expansion. If it exceeds 40, it is judged as negative amplification.
Embodiment 3
[0072] The purpose of this example is to prepare a standard curve.
[0073] With the log value of the standard concentration template as the abscissa and the corresponding Ct value as the ordinate, the real-time fluorescence quantitative PCR standard curves of the Hp ureI and β-actin systems were drawn, respectively. The results showed that the amount of positive template was 1E 7 copies / μl~1×1E 3 In the range of copies / μl, the logarithmic value has a very good correlation with the Ct value (ureI R square is equal to 0.999, β-actin R square is equal to 0.998), and the amplification efficiency diagrams of ureI R and β-actin R are shown in figure 1 and 2 shown.
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