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Method and kit for constructing next-generation sequencing library

A technology for a second-generation sequencing library and a construction method, which is applied in the field of second-generation sequencing library construction methods and kits, can solve the problems of unfavorable low-frequency gene mutation detection, difficulty in ensuring detection accuracy, and large loss of template DNA, and achieves a reduction in Cost of building a library, removing false positives, and improving sensitivity

Pending Publication Date: 2021-11-26
浙江天远生物科技有限公司
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  • Abstract
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  • Claims
  • Application Information

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Problems solved by technology

[0004] The purpose of the present invention is to provide a method and a kit for constructing a next-generation sequencing library to solve the problem that the loss of template DNA in the above-mentioned background technology is very large, which is very unfavorable for the detection of low-frequency gene mutations, and the accuracy of detection is more difficult to guarantee. The problem of increasing sequencing costs

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  • Method and kit for constructing next-generation sequencing library
  • Method and kit for constructing next-generation sequencing library
  • Method and kit for constructing next-generation sequencing library

Examples

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Embodiment 1

[0041] Using the library construction method of the present invention to construct a next-generation sequencing DNA library to detect AKT1, TP53 and PIK3CA gene mutations.

[0042] 1.1 Specific primer design

[0043]The following specific primers (equivalent to the single-stranded DNA shown in SEQ ID NO:3) were designed, wherein AKT1-T219P can be used to detect AKT1NM_001014431:c.A655C:p.T219P, and TP53-T245P can be used to detect TP53NM_001126115:c. A733C:p.T245P, PIK3CA-H047R can be used to detect PIK3CA NM_006218:c.A3140G:p.H1047R.

[0044] Specific primer sequences are shown in the table below

[0045]

[0046]

[0047] 1.2 DNA extraction

[0048] Select two plasma samples, use the magnetic bead method to extract free DNA samples 1 and 2 from 2mL plasma, and quantitatively take 10ng of free DNA to build a library, and use the above-mentioned specific primers to detect the target sequence. For the above two samples, use Except for different Index, other operations ...

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Abstract

The invention discloses a method and a kit for constructing a next-generation sequencing library in the field of nucleic acid sequencing, and the method comprises the following steps: step 1, extracting genome DNA needing to be sequenced, including but not limited to DNA of various tumor tissues, or free DNA of peripheral blood or DNA of various body fluids, such as but not limited to DNA in hydrothorax, urine, saliva and the like, and step 2, designing a primer sequence containing a specific target sequence primer, a sample marker sequence (index) and a sequencing primer, and synthesizing the primer is artificially; step 3, mixing the specific primer with DNA to be detected, and carrying out PCR amplification; step 4, purifying a PCR product; step 5, sequencing on a machine. According to the method and the kid for constructing the next-generation sequencing library, the library construction process is simplified, the library construction cost is reduced, the detection sensitivity is improved, the sequencing data volume required by detection is also reduced, false positive is effectively removed, the target DNA fragment enrichment efficiency is improved, and sequencing data waste is reduced.

Description

technical field [0001] The invention relates to the field of nucleic acid sequencing, in particular to a method and a kit for constructing a next-generation sequencing library. Background technique [0002] Gene mutation refers to the change of base pair composition or sequence in gene structure. In pathogen detection, tumor mutation gene detection, and fetal cell-free DNA detection in pregnant women’s plasma, it is necessary to find a small number of mutant genes in a large number of normal gene sequences. At this time, next-generation sequencing is characterized by its high-throughput sequencing. It can exert excellent characteristics and detect a small amount (less than 1%) of mutated genes in samples at a cost much lower than that of generation sequencing (Sanger sequencing), such as free DNA (ctDNA) with tumor characteristics in the plasma of cancer patients, cancer There is a low proportion of subclonal mutations in tissue samples (such as FFPE) and fetal cell-free DN...

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/6806C12N15/10C40B50/06
CPCC12Q1/6806C12N15/1093C40B50/06C12Q2531/113C12Q2535/122
Inventor 黄必胜胡咏武
Owner 浙江天远生物科技有限公司