Compositions and methods for the diagnosis and treatment of disorders involving angiogenesis

a technology of angiogenesis and composition, applied in the direction of peptide/protein ingredients, fusion polypeptides, fungi, etc., can solve the problems of reduced exercise tolerance, impaired quality of life, and left ventricular dysfunction

Inactive Publication Date: 2004-03-04
GENENTECH INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

0103] In yet other embodiments, the invention provides oligonucleotide probes useful for isolating genomic and cDNA nucleotide sequences or as antisense probes, wherein those probes may be derived from any of the above or below described nucleotide sequences.

Problems solved by technology

CHF is a syndrome characterized by left ventricular dysfunction, reduced exercise tolerance, impaired quality of life, and markedly shortened life expectancy.
The sine qua non of heart failure is an inability of the heart to pump blood at a rate sufficient to meet the metabolic needs of the body's tissues (in other words, there is insufficient cardiac output).
As noted below, angiotensin II may also have directly deleterious effects on the heart by promoting myocyte necrosis (impairing systolic function) and intracardiac fibrosis (impairing diastolic and in some cases systolic function).
With severe, long-standing overload, however, the hypertrophied cells begin to deteriorate and die.
Cardiac hypertrophy is a significant risk factor for both mortality and morbidity in the clinical course of heart failure.
However, because of its potent vasodilating properties, nifedipine may be harmful, especially in patients with outflow obstruction.
In many patients, however, the initial benefits decrease with time.
However, all positive inotropic agents except digoxigenin have been found to result in increased long-term mortality, in spite of short-term improvements in cardiac performance.
Another treatment modality is heart transplantation, but this is limited by the availability of donor hearts.
However, despite proven efficacy, response to ACE inhibitors has been limited.
For example, while prolonging survival in the setting of heart failure, ACE inhibitors appear to slow the progression towards end-stage heart failure, and substantial numbers of patients on ACE inhibitors have functional class III heart failure.
Moreover, improvement of functional capacity and exercise time is only small and mortality, although reduced, continues to be high.
Hence, ACE inhibitors consistently appear unable to relieve symptoms in more than 60% of heart failure patients and reduce mortality of heart failure only by approximately 15-20%.
However, when the aorta is constricted in these animals (a model of hypertensive cardiac stress), the hearts still become hypertrophic.
ACE inhibitors would presumably not be able to inhibit these pathways.

Method used

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  • Compositions and methods for the diagnosis and treatment of disorders involving angiogenesis
  • Compositions and methods for the diagnosis and treatment of disorders involving angiogenesis
  • Compositions and methods for the diagnosis and treatment of disorders involving angiogenesis

Examples

Experimental program
Comparison scheme
Effect test

example 1

6.1. Example 1

Extracellular Domain Homology Screening, to Identify Novel Polypeptides and cDNA Encoding Therefor

[0816] The extracellular domain (ECD) sequences (including the secretion signal sequence, if any) from about 950 known secreted proteins from the Swiss-Prot public database were used to search EST databases. The EST databases included public databases (e.g., Dayhoff, GenBank), and proprietary databases (e.g. LIFESEQ.RTM., Incyte Pharmaceuticals, Palo Alto, Calif.). The search was performed using the computer program BLAST or BLAST-2 (Altschul et al., Methods in Enzymology. 266:460-480 (1996)) as a comparison of the ECD protein sequences to a 6 frame translation of the EST sequences. Those comparisons with a BLAST score of 70 (or in some cases, 90) or greater that did not encode known proteins were clustered and assembled into consensus DNA sequences with the program "phrap" (Phil Green, University of Washington, Seattle, Wash.).

[0817] Using this extracellular domain homolo...

example 2

6.2. Example 2

Isolation of cDNA Clones by Amylase Screening

6.2.1. Preparation of Oligo dT Primed cDNA Library

[0820] mRNA was isolated from a human tissue of interest using reagents and protocols from Invitrogen, San Diego, Calif. (Fast Track 2). This RNA was used to generate an oligo dT primed cDNA library in the vector pRK5D using reagents and protocols from Life Technologies, Gaithersburg, Md. (Super Script Plasmid System). In this procedure, the double stranded cDNA was sized to greater than 1000 bp and the SalI / NotI linkered cDNA was cloned into XhoI / NotI cleaved vector. pRK5D is a cloning vector that has an sp6 transcription initiation site followed by an SfiI restriction enzyme site preceding the XhoI / NotI cDNA cloning sites.

6.2.2. Preparation of Random Primed cDNA Library

[0821] A secondary cDNA library was generated in order to preferentially represent the 5' ends of the primary cDNA clones. Sp6 RNA was generated from the primary library (described above), and this RNA was us...

example 3

6.3. Example 3

Isolation of cDNA Clones Using Signal Algorithm Analysis

[0839] Various polypeptide-encoding nucleic acid sequences were identified by applying a proprietary signal sequence finding algorithm developed by Genentech, Inc., (South San Francisco, Calif.) upon ESTs as well as clustered and assembled EST fragments from public (e.g., GenBank) and / or private (LIFESEQ.RTM., Incyte Pharmaceuticals, Inc., Palo Alto, Calif.) databases. The signal sequence algorithm computes a secretion signal score based on the character of the DNA nucleotides surrounding the first and optionally the second methonine codon(s) (ATG) at the 5'-end of the sequence or sequence fragment under consideration. The nucleotides following the first ATG must code for at least 35 unambiguous amino acids without any stop codons. If the first ATG has the required amino acids, the second is not examined. If neither meets the requirement, the candidate sequence is not scored. In order to determine whether the EST ...

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PUM

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Abstract

Compositions and methods are disclosed for stimulating or inhibiting angiogeniesis and/or cardiovascularization in mammals, including humans. Pharmaceutical compositions are based on polypeptides or antagonists thereto that have been identified for one or more of these uses. Disorders that can be diagnosed, prevented, or treated by the compositions herein include trauma such as wounds, various cancers, and disorders of the vessels including atherosclerosis and cardiac hypertrophy. In addition, the present invention is directed to novel polypeptides and to nucleic acid molecules encoding those polypeptides. Also provided herein are vectors and host cells comprising those nucleic acid sequences, chimeric polypeptide molecules comprising the polypeptides of the present invention fused to heterologous polypeptide sequences, antibodies which bind to the polypeptides of the present invention and to methods for producing the polypeptides of the present invention.

Description

1. FIELD OF THE INVENTION[0001] The present invention relates to compositions and methods useful for the modulation (e.g., promotion or inhibition) of angiogenesis and / or cardiovascularization in mammals in need of such biological effect. The present invention further relates to the diagnosis and treatment of disorders involving angiogenesis (e.g., cardiovascular as well as oncological disorders).2. BACKGROUND OF THE INVENTION2.1. Angiogenesis[0002] Angiogenesis, defined as the growth or sprouting of new blood vessels from existing vessels, is a complex process that primarily occurs during embryonic development. Under normal physiological conditions in adults, angiogenesis takes place only in very restricted situations such as hair growth and wounding healing (Auerbach, W. and Auerbach, R., 1994, Pharmacol Ther 63(3):265-3 11; Ribatti et al., 1991, Haematologica 76(4):3 11-20; Risau, 1997, Nature 386(6626):67 1-4). Unregulated angiogenesis has gradually been recognized to be respons...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): A61K38/00A61K38/17A61K39/395A61K39/44A61K45/00A61K47/48G01N33/53A61K49/00A61K51/00A61P17/02A61P29/00A61P35/00A61P35/04A61P43/00C07H21/04C07K14/435C07K14/47C07K14/515C07K16/18C07K19/00C12N1/15C12N1/19C12N1/21C12N5/06C12N5/10C12N9/00C12N15/09C12N15/12C12P21/02C12P21/08C12Q1/02C12Q1/68G01N33/15G01N33/566
CPCA61K38/00G01N2800/32C07K2319/00C07K14/515A61P17/02A61P29/00A61P35/00A61P35/04A61P43/00
Inventor BAKER, KEVIN P.FERRARA, NAPOLEONEGERBER, HANSPETERGERRITSEN, MARY E.GODDARD, AUDREYGODOWSKI, PAUL J.GURNEY, AUSTIN L.HILLAN, KENNETH J.MARSTERS, SCOT A.PAN, JAMESSTEPHAN, JEAN-PHILIPPE F.WATANABE, COLIN K.WILLIAMS, P. MICKEYWOOD, WILLIAM I.YE, WEILAN
Owner GENENTECH INC
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