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Genetic loci associated with fusarium solani tolerance in soybean

a gene locus and soybean technology, applied in the field of gene loci associated with fusarium solani tolerance in soybean, can solve the problems of relatively etc., to achieve rapid loss of resistance phenotype, severe losses in soybean viability and overall yield, and reduce these losses

Active Publication Date: 2006-02-23
PIONEER HI BRED INT INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

The patent describes methods for identifying soybean plants or germplasm that have resistance to Fusarium solani infection, which is a major disease of soybean that causes significant losses in yield. The invention provides markers that are closely linked to the resistance to Fusarium solani, which can be used in marker-assisted breeding programs to produce tolerant plants with improved tolerance or susceptibility to the disease. The invention also provides systems and kits for selecting tolerant plants and germplasm. Overall, the invention provides a way to effectively and environmentally friendly overcome losses caused by Fusarium solani infection in soybean cultivars.

Problems solved by technology

Fusaruim solani is a major disease of soybean, causing severe losses in soybean viability and overall yield.
However, the strong selective pressures that resistant soybean impose on Fusaruim solani cause relatively rapid loss of the resistance phenotype.

Method used

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  • Genetic loci associated with fusarium solani tolerance in soybean
  • Genetic loci associated with fusarium solani tolerance in soybean
  • Genetic loci associated with fusarium solani tolerance in soybean

Examples

Experimental program
Comparison scheme
Effect test

example 1

Intergroup Allele Frequency Distribution Analysis

[0301] Two independent allele frequency distribution analyses were undertaken to identify soybean genetic marker loci associated with tolerance to Fusarium solani infection. By identifying such genetic markers, marker assisted selection (MAS) can be used to improve the efficiency of breeding for improved tolerance of soybean to Fusarium solani infection.

Soybean Lines and Tolerance Scoring

[0302] The plant varieties used in the analysis were from diverse sources, including elite germplasm, commercially released cultivars and other public lines representing a broad range of germplasm. The lines used in the study had a broad maturity range varying from group 0 to group 6.

[0303] Two groups of soybean lines were assembled for each analysis based on their phenotypic extremes in tolerance to Fusarium solani infestation, where the plants were sorted into either highly susceptible or highly tolerant varieties. The classifications of tolera...

example 2

Association Mapping Analysis

[0318] An association mapping strategy was undertaken to identify soybean genetic markers associated with tolerance to Fusarium solani infection, which is the causative agent of soybean sudden death syndrome (SDS). The study was completed twice, generating two independent data sets. By identifying such genetic markers, marker assisted selection (MAS) can be used to improve the efficiency of breeding for improved tolerance of soybean to Fusarium solani infection. Association mapping is known in the art, and is described in various sources, e.g., Jorde (2000), Genome Res., 10: 1435-1444; Remington et al. (2001), “Structure of linkage disequilibrium and phenotype associations in the maize genome,” Proc Natl Acad Sci USA 98:11479-11484; and Weiss and Clark (2002), Trends in Genetics 18:19-24.

Association Mapping

[0319] Understanding the extent and patterns of linkage disequilibrium (LD) in the genome is a prerequisite for developing efficient association ap...

example 3

QTL Interval Mapping and Single Marker Regression Analysis

[0336] A QTL interval mapping and a single marker regression analysis was undertaken to identify soybean chromosome intervals and genetic markers (respectively) that are associated with tolerance and allow the plant to escape the pathology associated with Fusarium solani infection. QTL mapping and marker regression are widely used methods to identify genetic loci that co-segregate with a desired phenotype. By identifying such genetic loci, marker assisted selection (MAS) can be used to improve the efficiency of breeding for improved soybean strains.

Soybean Lines

[0337] A mapping population for Fusarium solani tolerance was created from the cross of commercially available Pioneer varieties 93B41 and P9362. The population consisted of 276 RIL progeny.

Phenotypic Scoring

[0338] RIL phenotypic data was collected from non-inoculated, non-irrigated, naturally infested field screening site at a site in Streator, Ill. The scoring...

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Abstract

The invention relates to methods and compositions for identifying soybean plants that are tolerant, have improved tolerance or are susceptible to Fusarium solani infection (the causative agent of sudden death syndrome or SDS). The methods use molecular genetic markers to identify, select and / or construct disease-tolerant plants or identify and counterselect disease-susceptible plants. Soybean plants that display tolerance or improved tolerance to Fusaruim solani infection that are generated by the methods of the invention are also a feature of the invention.

Description

CROSS-REFERENCE TO RELATED APPLICATIONS [0001] This application claims priority to and benefit of U.S. Provisional Patent Application Ser. No. 60 / 599,777, filed on Aug. 6, 2004, and U.S. Provisional Patent Application Ser. No. 60 / 599,705, filed on Aug. 6, 2004, the specifications of which are hereby incorporated by reference in their entirety.FIELD OF THE INVENTION [0002] The invention relates to compositions and methods for identifying soybean plants that are tolerant, have improved tolerance or are susceptible to Fusrium solani infection (the causative agent of sudden death syndrome), where the methods use molecular genetic markers to identify, select and / or construct disease-tolerant plants. The invention also relates to soybean plants that display tolerance or improved tolerance to Fusrium solani infection that are generated by the methods of the invention. BACKGROUND OF THE INVENTION [0003] Soybean, a legume, has become the world's primary source of seed oil and seed protein. I...

Claims

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Application Information

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Patent Type & Authority Applications(United States)
IPC IPC(8): A01H5/00A01H1/00C12Q1/68A01H5/10
CPCA01H1/04A01H5/10C12Q2600/13C12Q1/6895C12N15/8282A01H6/542A01H1/045C12Q2600/156
Inventor LU, HONGHAN, FENGSEBASTIAN, SCOTTKYLE, DONALDSTEPHENS, PAULCORBIN, THOMASTHOMPSON, JEFFREY
Owner PIONEER HI BRED INT INC
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