Bispecific antibodies and uses thereof

Inactive Publication Date: 2016-01-21
THE SCRIPPS RES INST
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  • Abstract
  • Description
  • Claims
  • Application Information

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Benefits of technology

[0013]Disclosed herein are methods of producing a bispecific antibodies of Formula II: X-L1′-L2′-Y or Formula IIA: Y-L2′-L1′-X, comprising: coupling L1″ to X to produce a first intermediate of Formula III: X-L1′ or Formula IIIA: L1′-X, wherein X comprises an anti-CD3 antibody or anti-CD3 antibody fragment; and L1″ comprises a first linker before being coupled to X, coupling L2″ to Y to produce a second intermediate of Formula IV: Y-L2′ or Formula IVA: L2′-Y; wherein Y comprises at least a portion of a second antibody or antibody fragment and L2″ comprises a second linker before being coupled to Y; and linking the first intermediate to the second intermediate, thereby producing the antibody of Formula II or HA. Coupling L1″ to X may comprise site-specific coupling of L1″ to X. Coupling L2″ to Y may comprise site-specific coupling of L2″ to Y. The method may further comprise incorporating one or more unnatural amino acids into X. The method may further comprise incorporating one or more unnatural amino acids into Y. Incorporating one or more unnatural amino acids into X and/or Y may comprise modifying one or more amino acid residues in X and/or Y to produce one or more amber codons in X and/or Y. The one or more unnatural amino acids may be incorporated into X and/or Y in response to an amber codon. The one or more unnatural amino acids may be site-specifically incorporated into X and/or Y. Incorporating one or more unnatural amino acids may comprise the use of one or more tRNA synthetases. The tRNA synthetase may be an aminoacyl tRNA synthetase. The tRNA synthetase may be a mutant tRNA synthesis. Incorporating one or more unnatural amino acids may comprise a tRNA/tRNA synthetase pair. The tRNA/tRNA synthetase pair may comprise a tRNA/aminoacyl-tRNA synthetase pair. The tRNA/tRNA synthetase pair may comprise a tRNATyr/tyrosyl-tRNA synthetase pair.
[0014]Coupling L1″ to X may occur at the one or more unnatural amino acids in X. Coupling L2″ to Y may occur at the one or more unnatural amino acids in Y. Coupling L1″ to X and coupling L2″ to Y may occur sequentially. Coupling L1″ to X and coupling L2 to Y may occur simultaneously. Coupling L1″ to X may occur prior to coupling L2″ to Y. Coupling L2″ to Y may occur prior to coupling L1″ to X. Coupling L1″ to X and/or coupling L2″ to Y may comprise forming one or more oxime bonds between L1″ and X and/or between L2″ and Y. Coupling L1″ to X and/or coupling L2″ to Y may comprise forming one or more stable bonds between L1″ and X and/or between L2″ and Y. Coupling L1″ to X and/or coupling L2″ to Y may comprise forming one or more covalent bonds between L1″ and X and/or between L2″ and Y. Coupling L1″ to X and/or coupling L2″ to Y may comprise forming one or more non-covalent bonds between L1″ and X and/or between L2″ and Y. Coupling L1″ to X and/or coupling L2″ to Y may comprise forming one or more ionic bonds between L1″ and X and/or between L2″ and Y.
[0015]Linking the first intermediate to the second intermediate may comprise a Huisgen-cycloaddition. Linking the first intermediate to the second intermediate may comprise a Diels-Halder reaction Linking the first intermediate to the second intermediate may comprise a hetero Diels-Alder reaction Linking the first intermediate to the second intermediate may comprise an enzyme-mediated reaction Linking the first intermediate to the second intermediate may comprise a copper-free [3+2] Huisgen-cycloaddition reaction Linking the first intermediate to the second intermediate may produce an oxime Linking the first intermediate to the second intermediate may produce a tetrazole Linking the first intermediate to the second intermediate may produce a Diels Alder adduct Linking the first intermediate to the second intermediate may produce a hetero Diels Alder adduct Linking the first intermediate to the second intermediate may produce an aromatic substitution reaction product Linking the first intermediate to the second intermediate may produce a nucleophilic substitution reaction product Linking the first intermediate to the second intermediate may produce an ester Linking the first intermediate to the second intermediate may produce an amide Linking the first intermediate to the second intermediate may produce a carbamate Linking the first intermediate to the second

Problems solved by technology

These current approaches may result in heterogeneous products and/or may require the development of antigen-spec

Method used

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  • Bispecific antibodies and uses thereof
  • Bispecific antibodies and uses thereof
  • Bispecific antibodies and uses thereof

Examples

Experimental program
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Effect test

example 1

Expression of Anti-CD3 Fab Double Mutant in E. coli

[0234]UCHT1-Fab sequences were obtained from the literature and inserted into a pBAD vector behind the stII signal sequence. The sites for unnatural amino acid incorporation (light chain threonine 109 (LC-Thr109), light chain serine 202 (LC-Ser202), heavy chain alanine 123 (HC-A123), and heavy chain lysine 138 (HC-Lys138)) were quickchanged (QuikChange® Stratagene) to TAG amber nonsense codon. For the double mutant, two residues (LC-Ser202 and HC-Lys138) were mutated to TAG amber nonsense codon. FIG. 1 depicts a ribbon diagram of the UCHT1-Fab fragment. The pBAD vector was co-transformed with pULTRA-pAcF (a vector containing orthogonal M. jannaschii tRNA and aminoacyl-tRNA synthetase specific for pAcF) in DH10B cells. The cells were grown in LB media (2 L) supplemented with 100 mg / ml ampicillin, 25 mg / ml chloramphenicol, and 1 mM pAcF at 37° C. and 250 rpm. At OD600 0.8, cells were induced with 0.2% arabinose and moved to 30° C. fo...

example 2

Synthesis of Bispecific Antibodies Using Genetically Encoded Unnatural Amino Acids

[0235]Our strategy takes advantage of genetically encoded unnatural amino acids with orthogonal chemical reactivity relative to the canonical twenty amino acids to site-specifically modify antibody fragments. Specifically, we used an evolved tRNA / aminoacyl-tRNA synthetase pair to site-specifically incorporate p-acetylphenylalanine (pAcF, FIG. 2A) at defined sites in each of two Fab fragments in response to an amber nonsense codon. The mutant Fab fragments were then selectively coupled by stable oxime formation using the alkoxy-amine termini of two bifunctional linkers (FIG. 2B). In a second step, the two Fab-linker conjugates were linked to each other in order to obtain the heterodimer through a copper-free [3+2] Huisgen-cycloaddition (“Click” reaction) (FIG. 2C). This approach has a number of advantages over recombinant technologies and conventional coupling chemistries. For example, the use of bioort...

example 3

Synthesis of Anti-Her2 / Anti-CD3 Heterodimer

[0238]pAcPhe was substituted at HC-K138 in the anti-anti-CD3 antibody, UCHT1. This site is distal to the antigen binding site and, when conjugated to the LC-5202 mutant anti-HER2 Fab with the same polyethylene glycol linker used above, should be long and flexible enough to allow the resulting bispecific antibody to productively bind both a CD3 positive T-cell and the HER2 positive target cell simultaneously. UCHT1 Fab was expressed in E. coli by the same method as described for anti-HER2 Fab and in Example 2, and the cyclooctyne linker-modified anti-CD3 was prepared as described in Example 7 in >95% yield as confirmed by ESI-MS (FIG. 3E, 3J). The anti-CD3-Fab-cyclooctyne conjugate was then coupled to anti-HER2-Fab-azide conjugate as described in Example 7 in 70% percent yield (determined by SDS-PAGE and chromatographic separation) and purified from unreacted Fab monomers by Superdex-200 size exclusion column. FIG. 4A shows the SDS-PAGE of t...

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Abstract

Methods, compositions and uses are provided for bispecific antibodies comprising one or more unnatural amino acids. The bispecific antibodies may bind to two or more different receptors, co-receptors, antigens, or cell markers on one or more cells. The bispecific antibodies may be used to treat a disease or condition (e.g., cancer, autoimmune disease, pathogenic infection, inflammatory disease). The bispecific antibodies may be used to modulate (e.g., stimulate or suppress) an immune response.

Description

CROSS-REFERENCE[0001]This application claims the benefit of U.S. provisional application Ser. No. 61 / 783,426, filed Mar. 14, 2013 and U.S. provisional application Ser. No. 61 / 839,330, filed Jun. 25, 2013; which are incorporated by reference in their entirety.STATEMENT AS TO FEDERALLY SPONSORED RESEARCH[0002]This invention was made with the support of the United States government under Contract number GM062159 by National Institutes of Health (NIH). The government has certain rights in the invention.FIELD OF THE INVENTION[0003]Described herein are immunoglobulin constructs comprising one or more unnatural amino acids, methods of making such constructs, pharmaceutical compositions and medicaments comprising such constructs, and methods of using such constructs and compositions to prevent, inhibit, and / or treat a disease or condition in a subject.BACKGROUND OF THE INVENTION[0004]Antibodies are natural proteins that the vertebrate immune system forms in response to foreign substances (a...

Claims

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Application Information

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IPC IPC(8): C07K16/28C07K16/46
CPCC07K16/468C07K16/2809C07K16/2863C07K2317/73C07K16/2887C07K16/2896C07K2317/31C07K16/2806C07K16/2803C07K16/2851C07K16/32A61K2039/505C07K2317/55C07K2317/33A61K47/542C07D249/04C07K2317/92A61P17/00A61P35/00A61P35/02Y02A50/30A61K39/3955A61K39/39558C07C275/16C07C275/24C07K16/3069C07K2317/94C07K2317/35C07K2317/52C07K2317/56
Inventor KIM, CHANHYUKAXUP, JUN Y.SCHULTZ, PETER G.YOUNG, TRAVISPINKERTON, STEPHANIEZHOU, QUANCAO, YU
Owner THE SCRIPPS RES INST
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