Method for qualitatively and quantitatively detecting nucleic acid based on high-flux sequencing technology

A quantitative detection and high-throughput technology, which is applied in the determination/inspection of microorganisms, biochemical equipment and methods, etc., to achieve the effect of less sample volume and simple operation

Active Publication Date: 2012-08-08
ANHUI ANKE BIOTECHNOLOGY (GRP) CO LTD
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0007] The purpose of the present invention is to provide a method for qualitative and quantitative detection of nucleic acid based on high-throughput sequencing technology, which solves various deficiencies in the qualitative and quantitative detection of nucleic acid by fluorescence real-time quantitative PCR method in the prior art

Method used

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  • Method for qualitatively and quantitatively detecting nucleic acid based on high-flux sequencing technology
  • Method for qualitatively and quantitatively detecting nucleic acid based on high-flux sequencing technology
  • Method for qualitatively and quantitatively detecting nucleic acid based on high-flux sequencing technology

Examples

Experimental program
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Effect test

Embodiment 1

[0085] Example 1 Example of a method for capturing specific nucleic acid targets by two-step unidirectional amplification of multiple genes and multiple regions

[0086] 1. Genomic DNA extraction and purification

[0087] 1. Add 400 μl Lysis Solution and 20 μl Proteinase K solution to 200 μl whole blood, mix well to obtain a homogeneous suspension.

[0088] 2. Incubate in a 56°C water bath for 10 minutes.

[0089] 3. Add 200 μl absolute ethanol and mix well.

[0090] 4. Transfer the prepared lysis mixture to the Gene JET Genomic DNA Purification Column. Centrifuge at 6000g for 1 min and discard the waste liquid. Transfer the Gene JET Genomic DNA Purification Column to a new 2ml collection tube.

[0091] 5. Add 500μl Wash buffer I, centrifuge at 8000g for 1min, discard the waste liquid, and put the purification column back into the collection tube.

[0092] 6. Add 500μl Wash buffer II to the Gene JET Genomic DNA Purification Column, and centrifuge at 12000g for 3min.

[0...

Embodiment 2

[0140] Example 2 Non-invasive (non-invasive) prenatal screening diagnosis of Down's syndrome and various congenital genetic diseases

[0141] Chromosomal abnormalities in the baby's cells can cause disease. There are 23 pairs or 46 chromosomes in normal human cells, but fetuses with chromosomal abnormalities will have increased chromosomes or decreased chromosomes. It leads to various diseases after birth. For example, Down syndrome with a high incidence is caused by three chromosomes 21. At present, if it is necessary to clearly diagnose whether it is a fetus with chromosomal abnormalities, it is necessary to draw fetal blood, amniotic fluid or placental villi for examination. These methods are all invasive examinations, which have certain risks to the fetus and pregnant women. The risks of fetal miscarriage, premature delivery, and intrauterine infection are about 1%-2%. If non-invasive means can be used to identify fetuses with chromosomal abnormalities from the DNA test ...

Embodiment 3

[0166] Example 3 Sequencing Qualitative and Quantitative Sequencing of Human Microbial Species and Their Relationship with Diseases and Health

[0167] With the continuous development of life science research, human beings have entered the post-genome era. The health of the human body depends on the interaction between genes and the environment. At present, a large number of studies focus on the analysis of the relationship between human genetic makeup and disease susceptibility and drug sensitivity. However, it is not only human genes that play a role in the body and affect people's life, aging, illness and death, but also the genes of a large number of symbiotic microorganisms. The sum of their genetic information is called the microbiome. The human microbiome refers to the general term for symbiotic, commensal and pathogenic microorganisms in the ecological community existing in the human body (mainly in the intestine) or on the surface. If a human being is defined as a co...

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Abstract

The invention discloses a method for qualitatively and quantitatively detecting nucleic acid based on a high-flux sequencing technology. The method comprises the following steps of: preparing a single-chain DNA (Deoxyribose Nucleic Acid) library with a method for capturing a specific nucleic acid target through multi-gene multi-region two-step and one-direction amplification; sequencing the obtained single-chain DNA library based on a high-flux sequencing technology; and qualitatively and quantitatively analyzing nucleic acid according to a sequencing result to obtain a qualitative and quantitative detection result of nucleic acid. Compared with an ordinary real-time Q-PCR (Quantitative Polymerase Chain Reaction) quantifying method, the method has the advantages of lower cost, wider application, increase in the quantifying sample flux of nucleic acid and capability of accurately qualifying and quantifying the series of nucleic acids.

Description

technical field [0001] The invention belongs to the technical field of gene sequencing, and in particular relates to a method for qualitative and quantitative detection of nucleic acid based on high-throughput sequencing technology. Background technique [0002] High-throughput sequencing technology is a revolutionary change to traditional sequencing (Sanger sequencing). Traditional sequencing technology can only measure a single gene fragment at a time. The whole genome + genome sequencing of a person completed for the first time between 1990 and 2003 used the traditional Sanger method, which took more than ten years and a huge amount of money. funding, mobilizing hundreds of scientists in several countries. High-throughput sequencing can sequence hundreds of thousands to millions or even tens of millions of DNA molecule fragments at a time. It only takes a few days to complete a person's genome sequencing, and the cost has dropped to several thousand dollars. [0003] Hi...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68
Inventor 杨楠艾洪新臧伯玮何越
Owner ANHUI ANKE BIOTECHNOLOGY (GRP) CO LTD
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