A group of oligonucleotide aptamers that specifically recognize Shigella sonnei

A technology of oligonucleotides and aptamers, which is applied in the field of food safety biology, can solve the problems that antibodies are easily affected by environmental factors such as temperature, affect specificity, and cumbersome operations, etc., and achieve short screening cycle, convenient synthesis, and excellent properties. stable effect

Active Publication Date: 2017-01-18
JIANGNAN UNIV
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Problems solved by technology

Traditional bacterial culture and biochemical identification are time-consuming and cumbersome to operate; although molecular biology detection methods such as PCR are fast and accurate, their specificity is easily affected by operating conditions; immunological detection is characterized by strong specificity, accuracy and sensitivity, but The process of preparing specific antibodies is time-consuming and complicated, and the prepared antibodies are also susceptible to environmental factors such as temperature

Method used

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  • A group of oligonucleotide aptamers that specifically recognize Shigella sonnei
  • A group of oligonucleotide aptamers that specifically recognize Shigella sonnei
  • A group of oligonucleotide aptamers that specifically recognize Shigella sonnei

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Embodiment Construction

[0016] The following is the application of Cell-SELEX technology to screen high specific affinity Shigella sonnei nucleic acid aptamers and its rapid detection of Shigella sonnei.

[0017] 1. Synthesize random single-stranded DNA library and primers (synthesized by IDT)

[0018] Random single-stranded DNA library: 5′-TGAGCCCAAGCCCTGGTATG-N40-GGCAGGTCTACTTTGGGATC-3′, a random ssDNA library with a length of 80nt was constructed, with fixed primer sequences at both ends and a random sequence of 40 bases in the middle, with a library capacity of more than 1014 ; Upstream primer: 5′-TGAGCCCAAGCCCTGGTATG-3′; 5′ phosphorylated downstream primer: 5′-(phosphate)-GATCCCAAAGTAGACCTGCC-3′, random ssDNA library and two primers were prepared with TE buffer to 100 μmol / L Store the stock solution at -20°C for future use.

[0019] 2. Acquisition and processing of Shigella sonnei used for screening

[0020] Shigella sonnei was cultured in LB liquid medium and cultured overnight at 37°C on a s...

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Abstract

The invention discloses a set of oligonucleotide aptamers Sp1 and Sp20 for specifically recognizing Sh.sonnei, belonging to the field of food safety molecular biology. The set of oligonucleotide aptamers Sp1 and Sp20 is prepared through the steps of through a Cell-SELEX technology, sequentially carrying out screening, amplifying, enzyme digestion, sequencing, and affinity and specificity analysis on a random single stranded oligonucleotide library synthesized in vitro by taking a complete Sh.sonnei cell as a target. The aptamers adopted by screening have the characteristics of high affinity and specificity, stable properties, low cost, and the like, is convenient for vitro synthesis and can be applied to the detection of Sh.sonnei in foods by marking functional groups or fluorescent dyes, thereby providing a new choice for existing antibody-dependent detection methods.

Description

technical field [0001] The invention relates to the field of food safety biotechnology, in particular to screening a group of oligokaryotes with high specific affinity for Shigella sonnei using SELEX technology (exponentially enriched ligand system evolution technology) in molecular biology technology The nucleotide aptamer provides scientific and theoretical basis for the application of the nucleic acid aptamer in the detection of Shigella sonnei in food. Background technique [0002] Shigella is a highly infectious and serious Gram-negative enteropathogenic bacterium. In developing countries, major health events of bacillary dysentery caused by Shigella occur frequently, especially in summer and autumn. There are about 160 million infection cases and about 1 million deaths from bacillary dysentery every year. Shigella is mainly caused by oral infection, and salads, raw vegetables, milk and dairy products, poultry, fruits, drinking water, and bakery products are easily con...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/115G01N15/14
Inventor 王周平巩文慧段诺吴世嘉夏雨马小媛郭晓飞
Owner JIANGNAN UNIV
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