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Method and kit for detecting human ATP7B gene mutation type

A kit and mutation site technology, applied in biochemical equipment and methods, microbial measurement/inspection, etc., can solve the problems of differences in mutation characteristics, difficulty in popularization and application, high cost, etc., achieve high accuracy and cost performance, and improve detection Flux, the effect of reducing the number of reactions

Inactive Publication Date: 2015-09-23
INST OF NEUROLOGY AFFILIATED HOSPITAL OF ANHUI MEDICAL UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, this method requires high personnel and equipment, and it is difficult to be popularized and applied in general hospitals; and the WD gene is about 80kb in length, and each exon has a variety of mutation forms, and it is costly and time-consuming to sequence and analyze all exons one by one , generally unbearable for patients
A large number of research results have confirmed that there is a high degree of genetic heterogeneity in the WD gene, and there are many mutation sites in each exon. At present, more than 300 forms of gene mutations have been found, and most of them are compound heterozygous mutations. It is a rare mutation, and there are obvious differences in the mutation characteristics of different races
Although this explains the complex and diverse clinical manifestations of WD patients, it brings difficulties to the clinical practice of gene diagnosis

Method used

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  • Method and kit for detecting human ATP7B gene mutation type
  • Method and kit for detecting human ATP7B gene mutation type
  • Method and kit for detecting human ATP7B gene mutation type

Examples

Experimental program
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Embodiment 1

[0074] The design of embodiment 1 primer

[0075] (1) PCR amplification primers:

[0076]According to the selected 18 kinds of ATP7B gene mutant types to be detected (see Table 1 for specific mutation site information), design specific PCR amplification primers for each ATP7B gene mutant type, and the PCR amplification primers can amplify including A DNA sequence including the mutation site. The PCR amplification primer has at least 15 bases that completely match the gene sequence it is targeting at the 3' end, and has a tag sequence of 10 bases (acgttggatg) at the 5' end to distinguish the PCR amplification primer from the mass spectrum Extension primers, the designed PCR amplification primers are shown in Table 2.

[0077] (2) Mass spectrometry extension primer:

[0078] Design the mass spectrometry extension primer, the length of the mass spectrometry extension primer is 17-28 bases, and its 3' end is located at the last base of the ATP7B gene mutation site, and the mass...

Embodiment 2

[0091] Preparation of detection template

[0092] Genomic DNA of collected blood samples was extracted using Tiangen blood genomic DNA extraction kit, and the specific operation process was carried out according to the instructions.

Embodiment 3

[0093] Example 3 Detection method of ATP7B gene mutant type

[0094] (1) Using the DNA extracted in Example 2 as a template, use the PCR amplification primers in Example 1 to amplify by PCR to obtain the target sequence amplification product. See Table 4 for the PCR amplification reaction system. Among them, all reagents were purchased from Sequenom Company.

[0095] Table 4 PCR amplification reaction system

[0096]

[0097] The PCR reaction conditions were 94°C for 15 minutes; denaturation at 94°C for 20 seconds, annealing at 56°C for 30 seconds, extension at 72°C for 1 minute, and a total of 45 cycles of amplification; finally, extension at 72°C for 3 minutes. In this example, the DNA extracted in Example 2 was used as the DNA template for PCR amplification. At the same time, sterile double distilled water was used as a negative control. The control sample and the test sample were reacted and tested according to the same reaction process to verify the validity of the...

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Abstract

The invention discloses a method and a kit for detecting a human ATP7B gene mutation type. The kit comprise a PCR amplification primer, a mass spectrum extension primer and a MassARRAY chip. The method includes the steps of firstly, preparing the PCR amplification primer; secondly, preparing the mass spectrum extension primer; thirdly, preparing a detecting template; fourthly, performing PCR amplification to obtain a target sequence amplification product; fifthly, performing SAP enzyme treatment; sixthly, using extension reaction to obtain an extension product; seventhly, purifying; eighthly, performing time of flight mass spectrometric detection. The kit and the method have the advantages that the ATP7B gene mutation sites can be simultaneously and accurately detected, and the kit and the method is high in throughput, automatic and low in cost.

Description

technical field [0001] The invention relates to the technical field of molecular biology, in particular to the fields of multiple PCR amplification technology and time-of-flight mass spectrometry genotyping system (MassArray). More specifically, the present invention relates to a method and kit for detecting human ATP7B gene mutant. Background technique [0002] Hepatolenticular degeneration (HLD), also known as Wilson's disease (WD), is an autosomal recessive hereditary disorder of copper metabolism. The incidence rate of different populations is about 15-30 / 1 million. Its gene is located at 13q14.3, and its cDNA encodes a P-type copper-transporting ATPase (copper-transporting P-type ATPase, ATP7B) with a molecular weight of about 165Kda consisting of 1465 amino acids. Due to the mutation of ATP7B gene in patients with WD, the ATP7B enzyme function defect located in the trans-Golgi network (TGN) of liver cells and the side of the bile duct membrane leads to the disorder of...

Claims

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Application Information

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IPC IPC(8): C12Q1/68
CPCC12Q1/6858C12Q2533/101C12Q2565/627
Inventor 程楠王训韩永升韩咏竹
Owner INST OF NEUROLOGY AFFILIATED HOSPITAL OF ANHUI MEDICAL UNIV
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