Method for corresponding peanut genome chromosome sequence map to actual karyotype chromosome number
A chromosome and genome technology, applied in biochemical equipment and methods, microbial measurement/inspection, etc., can solve the problems of difficulty in using excellent genes in genome research, unclear physical locations, etc., and achieve the effect of promoting research and utilization
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[0053] A method for corresponding the peanut genome chromosome sequence diagram to the actual karyotype chromosome sequence number, comprising the following steps:
[0054] (1) Design of chromosome-specific oligonucleotide (oligo) probes
[0055] Using the draft genome sequence of the peanut wild species A. duranensis published by PeanutBase (https: / / peanutbase.org / gbrowse_aradu1.0), select the 0-8.5 Mb end of the short arm of the gene-enriched region A6 as the target segment. Then design analysis parameters: (a) oligonucleotide length 42-48nt; (b) oligonucleotide density>2oligos / kb; (c) oligonucleotide dTm (DNA melting temperature - hairpin DNA melting temperature)> 10°C; the genome sequence and analysis parameters of the target segment were sent to MYcroarray Company (USA) for bioinformatics analysis, and MYcroarray Company used the RepeatMasker software to analyze the target segment and eliminate the genome repeat sequence of the target segment (http: / / www. repeatmasker.or...
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