A AND gate logic operation method based on linear double-stranded DNA molecular connection and its application
A DNA molecule and operation method technology, which is applied in the field of AND gate logic operation based on the connection of linear double-stranded DNA molecules, can solve the problems of increasing cell burden, complex construction strategy of AND gate logic gene circuit, and inability to achieve high signal-to-noise ratio, etc. To achieve the effect of reducing the burden on cells
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Embodiment 1
[0056] Logic operation and experimental results of linear double-stranded DNA AND gate at cell level 2
[0057] Such as figure 2 , image 3 As shown, using the pcDNA3.0-luc expression plasmid as a template, the following primers were used for PCR amplification to obtain three sets of linear double-stranded DNA products, including:
[0058] The first group: CMV-luc[1-205] (i.e. the base sequence shown in SEQ ID NO.1 in the sequence listing) and luc[206-1653]-BGH poly A signal (i.e. the SEQ ID NO.1 in the sequence listing base sequence shown in NO.2);
[0059] Using the pcDNA3.0-luc plasmid as a template, use the primer sequences shown in SEQ ID NO.11 and SEQ ID NO.12 to amplify by PCR the DNA fragment of the nucleotide sequence shown in SEQ ID NO.1, which is CMV-luc[1-205]; PCR reaction system (50μl): KOD DNA polymerase (1unit / μl), 1μl; 10×KOD buffer, 5μl; 2mM dNTPs, 5μl; 25mM MgSO 4 , 3μl; 20μM Forward primer, 1μl; 20μM Reverse primer, 1μl; pcDNA3.0-luc (10ng / μl), 1μl; H ...
Embodiment 2
[0093] A 2-input AND gate logic operation method based on the connection of linear double-stranded DNA molecules was used to realize the expression of green fluorescent protein at the cell level.
[0094] Such as Figure 4 , Figure 5 As shown, according to the pEGFP-C1 green fluorescent protein expression plasmid DNA sequence, the following two linear double-stranded DNAs were obtained by PCR amplification:
[0095] Using the pEGFP-C1 plasmid as a template, use the primer sequences shown in SEQ ID NO.23 and SEQ ID NO.24 to amplify by PCR to obtain the DNA fragment of the nucleotide sequence shown in SEQ ID NO.7, which is CMV; PCR reaction system (50μl): KODDNA polymerase (1unit / μl), 1μl; 10×KOD buffer, 5μl; 2mM dNTPs, 5μl; 25mM MgSO 4 , 3μl; 20μM Forward primer, 1μl; 20μM Reverse primer, 1μl; pcDNA3.0-luc (10ng / μl), 1μl; H 2 O, 33 μl. The PCR reaction conditions are: 94°C, 2min; (94°C, 30sec; 55°C, 30sec; 68°C, 2min), 35 cycles; 68°C, 10min;
[0096] Get the upstream end...
Embodiment 3
[0107] According to the pEGFP-C1 green fluorescent protein expression plasmid DNA sequence, PCR amplification obtained the following three kinds of linear double-stranded DNA:
[0108] Such as Image 6 , Figure 7 , Figure 8 As shown, using the pEGFP-C1 plasmid as a template, using the primer sequences shown in SEQ ID NO.27 and SEQ ID NO.28 to obtain the DNA fragment of the nucleotide sequence shown in SEQ ID NO.9 by PCR amplification, namely CMV; PCR reaction system (50μl): KOD DNA polymerase (1unit / μl), 1μl; 10×KOD buffer, 5μl; 2mM dNTPs, 5μl; 25mM MgSO 4 , 3μl; 20μM Forward primer, 1μl; 20μM Reverse primer, 1μl; pcDNA3.0-luc (10ng / μl), 1μl; H 2 O, 33 μl. The PCR reaction conditions are: 94°C, 2min; (94°C, 30sec; 55°C, 30sec; 68°C, 2min), 35 cycles; 68°C, 10min;
[0109] Get the upstream end primer of CMV:
[0110] 5'-CTTTCCTGCGTTATTCCCCTGATTCT-3' (the base sequence shown in SEQ ID NO.27 in the sequence listing);
[0111] Get the downstream end primer of CMV:
[011...
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