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A AND gate logic operation method based on linear double-stranded DNA molecular connection and its application

A DNA molecule and operation method technology, which is applied in the field of AND gate logic operation based on the connection of linear double-stranded DNA molecules, can solve the problems of increasing cell burden, complex construction strategy of AND gate logic gene circuit, and inability to achieve high signal-to-noise ratio, etc. To achieve the effect of reducing the burden on cells

Active Publication Date: 2020-10-13
童欣
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0005] In the prior art, the defects and deficiencies mainly include: (1) The construction strategy of the existing AND gate logic gene circuit is relatively complicated. Firstly, cells need to express various proteins or RNA molecules, and on this basis, through the relationship between these molecules and DNA molecules The interaction among them realizes the AND gate operation
Expressing protein or RNA molecules before logic operations increases the burden on cells; (2) The current AND gate logic gene circuit design strategy cannot achieve high signal-to-noise ratio, that is, in [0,0][0,1][1,0 ] to achieve a signal output close to the background, and a stronger signal output in the case of [1,1]; (3) The current AND gate logic gene circuit design strategy does not utilize the split gene expression core components (promoter- Gene coding region-poly A signal, promoter-gene-polyA signal) to achieve high signal-to-noise ratio output

Method used

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  • A AND gate logic operation method based on linear double-stranded DNA molecular connection and its application
  • A AND gate logic operation method based on linear double-stranded DNA molecular connection and its application
  • A AND gate logic operation method based on linear double-stranded DNA molecular connection and its application

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Experimental program
Comparison scheme
Effect test

Embodiment 1

[0056] Logic operation and experimental results of linear double-stranded DNA AND gate at cell level 2

[0057] Such as figure 2 , image 3 As shown, using the pcDNA3.0-luc expression plasmid as a template, the following primers were used for PCR amplification to obtain three sets of linear double-stranded DNA products, including:

[0058] The first group: CMV-luc[1-205] (i.e. the base sequence shown in SEQ ID NO.1 in the sequence listing) and luc[206-1653]-BGH poly A signal (i.e. the SEQ ID NO.1 in the sequence listing base sequence shown in NO.2);

[0059] Using the pcDNA3.0-luc plasmid as a template, use the primer sequences shown in SEQ ID NO.11 and SEQ ID NO.12 to amplify by PCR the DNA fragment of the nucleotide sequence shown in SEQ ID NO.1, which is CMV-luc[1-205]; PCR reaction system (50μl): KOD DNA polymerase (1unit / μl), 1μl; 10×KOD buffer, 5μl; 2mM dNTPs, 5μl; 25mM MgSO 4 , 3μl; 20μM Forward primer, 1μl; 20μM Reverse primer, 1μl; pcDNA3.0-luc (10ng / μl), 1μl; H ...

Embodiment 2

[0093] A 2-input AND gate logic operation method based on the connection of linear double-stranded DNA molecules was used to realize the expression of green fluorescent protein at the cell level.

[0094] Such as Figure 4 , Figure 5 As shown, according to the pEGFP-C1 green fluorescent protein expression plasmid DNA sequence, the following two linear double-stranded DNAs were obtained by PCR amplification:

[0095] Using the pEGFP-C1 plasmid as a template, use the primer sequences shown in SEQ ID NO.23 and SEQ ID NO.24 to amplify by PCR to obtain the DNA fragment of the nucleotide sequence shown in SEQ ID NO.7, which is CMV; PCR reaction system (50μl): KODDNA polymerase (1unit / μl), 1μl; 10×KOD buffer, 5μl; 2mM dNTPs, 5μl; 25mM MgSO 4 , 3μl; 20μM Forward primer, 1μl; 20μM Reverse primer, 1μl; pcDNA3.0-luc (10ng / μl), 1μl; H 2 O, 33 μl. The PCR reaction conditions are: 94°C, 2min; (94°C, 30sec; 55°C, 30sec; 68°C, 2min), 35 cycles; 68°C, 10min;

[0096] Get the upstream end...

Embodiment 3

[0107] According to the pEGFP-C1 green fluorescent protein expression plasmid DNA sequence, PCR amplification obtained the following three kinds of linear double-stranded DNA:

[0108] Such as Image 6 , Figure 7 , Figure 8 As shown, using the pEGFP-C1 plasmid as a template, using the primer sequences shown in SEQ ID NO.27 and SEQ ID NO.28 to obtain the DNA fragment of the nucleotide sequence shown in SEQ ID NO.9 by PCR amplification, namely CMV; PCR reaction system (50μl): KOD DNA polymerase (1unit / μl), 1μl; 10×KOD buffer, 5μl; 2mM dNTPs, 5μl; 25mM MgSO 4 , 3μl; 20μM Forward primer, 1μl; 20μM Reverse primer, 1μl; pcDNA3.0-luc (10ng / μl), 1μl; H 2 O, 33 μl. The PCR reaction conditions are: 94°C, 2min; (94°C, 30sec; 55°C, 30sec; 68°C, 2min), 35 cycles; 68°C, 10min;

[0109] Get the upstream end primer of CMV:

[0110] 5'-CTTTCCTGCGTTATTCCCCTGATTCT-3' (the base sequence shown in SEQ ID NO.27 in the sequence listing);

[0111] Get the downstream end primer of CMV:

[011...

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Abstract

The invention discloses an AND gate logic operation method based on linear double-stranded DNA molecule connection. The gene expression core assembly sequence containing a promoter, a gene coding region and a poly A signal is split into 2-3 linear double-stranded DNA molecules as the input by PCR amplification reaction and transfected into cells. When all linear double-stranded DNA molecules are simultaneously present, the linear double-stranded DNA molecules reform the complete gene expression core assembly sequence by the connection reaction in the cells and achieve gene expression to achieve the AND gate logic operation accordingly. The low noise ratio AND gate logic operation method based on the linear double-stranded DNA molecules is provided and can be widely applied to synthetic biology and biological calculation.

Description

technical field [0001] The invention relates to the field of synbiotic organisms, in particular to an AND gate logic operation method based on the connection of linear double-stranded DNA molecules. Background technique [0002] Synthetic biology (Synthetic biology) is an emerging interdisciplinary subject in the 21st century, emphasizing "design" and "redesign", and its purpose is to solve problems such as health, environmental protection and energy by artificially designing and constructing biological systems that do not exist in nature. In recent years, major breakthroughs such as the artemisinic acid microbial synthesis factory of the J.D. Keasling research group, the E. coli imaging system of the C.A. Voigt research group, and the new strains created by the J.C. Venter and G. Church research groups have demonstrated the great potential of synthetic biology to change the world. potential. Synthetic biology will have great scientific significance for human beings to unde...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/90C12N15/10
Inventor 李帅苏位君张春泽
Owner 童欣
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