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Synthesis method of On-DNA aryl azide compound in construction of DNA coding compound library

A technology of compound library and aryl azide, which is applied in the field of DNA-encoded compound library, can solve the problems such as the scarcity and limitation of binary reagents, and achieve the effects of convenient operation, mild reaction conditions, and cheap and easy-to-obtain catalysts

Active Publication Date: 2019-08-09
上海药明康德新药开发有限公司
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  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0022] At present, in the field of DNA-encoded compound libraries, On-DNA aryl azides are mainly prepared by reacting On-DNA compounds with binary small molecule reagents with azide groups and functional groups complementary to those of On-DNA compounds. For example, DNA amino compounds and binary reagents containing azido and carboxyl groups are used to prepare On-DNA azide compounds through condensation reactions. Due to the scarcity of such binary reagents, the availability of On-DNA azide compounds is limited, which in turn limits the function of Types and quantities of On-DNA arylamine compounds and On-DNA 1,4-disubstituted-1,2,3-triazole compounds obtained through group conversion

Method used

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  • Synthesis method of On-DNA aryl azide compound in construction of DNA coding compound library
  • Synthesis method of On-DNA aryl azide compound in construction of DNA coding compound library
  • Synthesis method of On-DNA aryl azide compound in construction of DNA coding compound library

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Embodiment 1

[0047] Embodiment 1, the synthesis of On-DNA aryl halogenated compound

[0048] DNA-NH 2 (For example, the starting head fragment mentioned in the patent CN108070009A) was dissolved in 250mM, pH=9.5 boric acid buffer solution, prepared into a 1mM concentration solution, distributed into a 96-well plate, and used EDCI with the halogenated aryl carboxyl binary compound As a condensing agent and s-NHS condensation activator, the corresponding On-DNA aryl halogenated compound (references: Nat.Chem., 2015, 7, 3, 241, see figure 1 ), after the reaction is completed, only ethanol precipitation treatment is performed, concentrated and dried, and directly used for the next reduction reaction.

[0049]

Embodiment 2

[0050] Embodiment 2, the synthesis of On-DNA aryl azides

[0051] The DNA-Ar-X generated in situ was redissolved in ultrapure water, prepared into a 1mM concentration solution, dispensed into a new 96-well plate (10μL, 10nmol, 1mM aqueous solution), and sequentially added sodium azide solution (25μL , 5000nmol, 200mM aqueous solution, 500eq.), CuI solution (10μL, 300nmol, 30mM dimethyl sulfoxide solution, 300eq.), N,N'-dimethylethylenediamine solution (10μL, 300nmol, 30mM di Methyl sulfoxide solution, 600eq.), sodium ascorbate solution (5μL, 1000nmol, 200mM aqueous solution, 300eq.), centrifuged, let the solution sink to the bottom, vortex mixed, centrifuged again, replaced nitrogen 3 times, sealed Membranes and 96-well plates were reacted in a PCR instrument at 40°C for 16 hours (cover temperature: 40°C).

[0052]

[0053] Copper removal:

[0054] After the reaction is complete, add sodium diethyldithiocarbamate solution (6.0μL, 600nmol, 100mM aqueous solution, 60eq.) to...

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Abstract

The invention discloses a preparation method of an On-DNA aryl azide compound used for constructing a DNA coding compound library. According to the method, an On-DNA aryl halide is taken as a substrate to react with an azide reagent to prepare the On0DNA aryl azide compound in the presence of a copper catalyst, a ligand and a base. The preparation method of the On-DNA aryl azide compound has the advantages that the catalyst is cheap and easy to obtain, the reaction condition is mild, the operation is convenient, and the method is suitable for the synthesis of the DNA coding compound library performed by a porous plate.

Description

technical field [0001] The invention belongs to the technical field of DNA coded compound libraries, and in particular relates to a method for obtaining On-DNA aryl azide compounds by reacting On-DNA aryl halides with azide reagents. Background technique [0002] Sydney Brenner and Professor Richard Lerner of the Scripps Research Institute in the United States proposed the concept of a DNA Encoded Library (DNA Encoded Library, referred to as DEL) in 1992 (reference: Proc.Natl.Acad.Sci., 1992,89, 5381, patent : US5573905), the method connects an organic small molecule reagent with a unique sequence of DNA at the molecular level (i.e. DNA labeling the small molecule reagent), and utilizes the "combination-splitting" strategy of combinatorial chemistry to pass two at most A large number of compound libraries can be quickly constructed in one cycle, each compound in the compound library is composed of different organic small molecule reagent residues, and is identified by the co...

Claims

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Application Information

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IPC IPC(8): C07H1/00C07H21/04
CPCC07H1/00C07H21/04
Inventor 刘炜袁友浪邓伟吴阿亮陈雯婷李科蒯乐天杨洪芳彭宣嘉
Owner 上海药明康德新药开发有限公司
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