Usage of HOXA7 and HOXA9 methylation detection reagents in preparation of lung cancer diagnostic reagents
A technology of HOXA7 and HOXA9, which is applied in the direction of DNA/RNA fragments, recombinant DNA technology, microbial measurement/inspection, etc., can solve the loss of patients, the sensitivity and specificity of tumor markers cannot meet the needs, and there is no non-invasive screening method for lung cancer and other problems to achieve the effect of improving the detection effect
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Embodiment 1
[0089] Example 1: Selection of Detection Target Genes
[0090] Methylated DNA has obvious advantages as a detection target. Compared with protein markers, DNA can be amplified and easily detected; compared with mutation markers, DNA methylation sites are located in the gene Specific sites, usually in the promoter region, make detection easier and more convenient. In order to complete the present invention, the inventor screened a large number of genes, selected representative HOXA7, HOXA9, SHOX2, PCDHGA12, HOXD8, and GATA3 as candidate detection genes, and β-actin gene as an internal reference gene to study the methylation sites of each gene According to the distribution, the primers and probes designed for detection were used for real-time fluorescent quantitative methylation-specific polymerase chain reaction (real-time fluorescent quantitative methylation-specific PCR, qMSP) detection. The detection primers and probes for each gene are as follows:
[0091] The detection p...
Embodiment 2
[0148] Example 2: Detection of HOXA7, HOXA9, SHOX2, PCDHGA12, HOXD8 and GATA3, and combinations of HOXA7 and HOXA9 in sputum
[0149] Sample information: A total of 90 sputum samples were tested, including 55 samples from the normal control group, 35 samples from the cancer group, and 12 cases of squamous cell carcinoma, 6 cases of small cell carcinoma, 9 cases of adenocarcinoma, and large cell carcinoma in the 35 samples of the cancer group. There were 2 cases of carcinoma and 6 cases of lung cancer not clearly classified.
[0150] Experimental procedure:
[0151] a. Collect sputum specimens from patients diagnosed with lung cancer and non-lung cancer patients. After thickening with DTT, centrifuge to separate the pellet and separate the cells, wash them twice with PBS, and then use Magen’s DNA extraction kit (HiPure FFPE DNA Kit, D3126-03) to extract DNA.
[0152] b. Use the DNA conversion kit (EZ DNAMethylation Kit, D5002) of ZYMO RESEARCH Biological Company to carry out ...
Embodiment 3
[0169] Example 3: Detection of HOXA7, HOXA9 and SHOX2 genes in sputum
[0170] A large number of documents show that SHOX2 can be used as a marker for the detection of lung cancer, and a patent shows [CN201510203539 Method and kit for diagnosing methylation of human SHOX2 gene and human RASSF1A gene - application disclosure], SHOX2 can be used in alveolar lavage fluid, lesion tissue , pleural effusion, sputum and other samples have a high detection rate. In order to verify the detection effect of HOXA7 and HOXA9, the inventors simultaneously detected HOXA7 and HOXA9 SHOX2_n3 genes. In this example, the detection efficiency of the SHOX2 gene uses the primer and probe sequences disclosed in the patent CN201510203539, and the SHOX2 gene is expressed as SHOX2_n3, to distinguish it from the self-designed primer and probe sequences used in Examples 1 and 2 of the present invention. Needle detection of the SHOX2 gene.
[0171] detection results.
[0172] The detection primers and ...
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