The invention provides a combined detection method of flow cytometry in humoral cellular immunoassay, and relates to the technical field of immunoassay. The combined detection method of the flow cytometry in humoral cellular immunoassay comprises the following steps of: S1, collecting a humoral specimen; S2, evaluating the quality and quantity of specimens; S3, carrying out conventional cell population classification, multi-label immune typing, cytokine analysis and tumor marker inspection; and S4, carrying out result analysis. According to the combined detection method, a direct fluorescence labeling cell surface antibody and nucleic acid technology is combined with conventional cell examination and other methods to carry out combined detection analysis, such that the combined detection method can be used for detecting a variety of diseases such as benign and malignant tumors, inflammations, bacteria, tuberculosis infection and the like, has a wide disease detection range, and has high clinical diagnosis and identification significance; and various body fluids such as urine, sputum, alveolar lavage fluid, pleuroperitoneal fluid and dialysate can be adopted for detection, materials are convenient and simple to obtain, and the cost is low.