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Methods and compositions for degrading pectin

a technology of pectin and composition, applied in the field of methods and compositions for degrading pectin, can solve the problems of pectin being esterified or unesterified,

Inactive Publication Date: 2012-04-19
UNIV OF GEORGIA RES FOUND INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0033]For any method disclosed herein that includes discrete steps, the steps may be conducted in any feasible order. And, as appropriate, any combination of two or more steps may be conducted simultaneously.
[0034]The term “and/or” means one or all of the listed elements or a combination of any two or more of the listed elements.
[0035]The above summary of the present invention is not intended to describe each disclo

Problems solved by technology

The pectin may be esterified or unesterified.
The pectin may be esterified or unesterified.

Method used

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  • Methods and compositions for degrading pectin
  • Methods and compositions for degrading pectin
  • Methods and compositions for degrading pectin

Examples

Experimental program
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Effect test

example 1

[0102]Ethanologen Escherichia coli KO11 was sequentially engineered to produce the Klebsiella oxytoca EnzymeIIcellulose and phospho-βglucosidase genes (casAB) as well as a pectate lyase (pelE) from Erwinia chrysanthemi, yielding strains LY40A (casAB) and JP07 (casAB; pelE), respectively. To obtain effective secretion of PelE, the Sec-independent pathway out genes from E. chrysanthemi on the cosmid pCPP2006 were provided to strain JP07 to construct strain JP07C. E. coli strains LY40A, JP07, and JP07C possessed significant cellobiase activity in cell lysates, while only strain JP07C demonstrated extracellular pectate lyase activity. Fermentation with sugar beet pulp at very low fungal enzyme loads during saccharification revealed significantly higher ethanol production for LY40A and JP07C compared to KO11. While JP07C ethanol yields were not considerably higher than LY40A, investigation of oligogalacturonide polymerization showed an increased breakdown of biomass to small chain (degre...

example 2

[0123]Paenibacillus amylolyticus C27 was isolated from the hindgut of Tipula abdominalis and found to produce lignocellulose-degrading enzymes. A library was constructed with C27 genomic DNA for heterologous expression of biological characteristics in Escherichia coli. Two pectate lyase genes, pelA and pelB, were identified while screening a genomic library in E. coli for pectinase activity. PelA encodes a 222 amino acid protein and demonstrated highest activity on polygalacturonic acid, but retained 60% and 56% of maximum activity on 8.5% and 90% methylated pectin, respectively. CaCl2 was required for activity, and optima were pH 10.5, 45° C., and 1.5 mM CaCl2. PelA has high identity (95%) to PelA from P. barcinonensis, and is a subclass of the pectate lyase family III from saprophytic, non-pathogenic bacteria. On the other hand, pelB encodes a 392 amino acid protein. Although PelB showed the highest activity on 20-34% methylated pectin, it retained 67%, 51%, 25%, and 1% of its max...

example 3

[0144]Degradation of sugar beet pulp and examination of oligogalacturonides. Precultures of E. coli carrying plasmid pEDH27 were grown in LB with 50 mg L−1 ampicillin overnight with shaking at 37° C. and inoculated into LB with 5% dry wt L−1 sugar beet pulp to OD550 0.5. Sugar beet pulp cultures were grown at 37° C. with shaking and samples were removed every 24 h.

[0145]To quantify oligogalacturonides with a degree of polymerization (dp) less than 6, fermentation supernatant was diluted 1:3 in water and ethanol was added to a final concentration of 11% (vol / vol). The solution was incubated with agitation for 16 h at 4° C. and then centrifuged at 7500 g for 15 min. This supernatant was diluted and analyzed at 235 nm (Spiro et al., 1993, Carbohydr. Res., 247:9-20) and compared to the absorbance of fermentation supernatant preparation immediately after inoculation.

[0146]Construction of E. coli JP27. Plasmid pEDH27 was transformed by heat shock into E. coli LY40A to construct strain JP2...

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Abstract

The present invention provides enriched polynucleotides, and enriched polypeptides having pectinase activity. The present invention also includes methods of using the polynucleotides and polypeptides described herein. For instance, the methods include producing a metabolic product, such as ethanol.

Description

CONTINUING APPLICATION DATA[0001]This application claims the benefit of U.S. Provisional Application Ser. No. 61 / 097,975, filed Sep. 18, 2008, and 61 / 179,570, filed May 19, 2009, each of which is incorporated by reference herein.BACKGROUND[0002]The US Energy Independence and Security Act (EISA) of 2007 states that transportation fuel introduced into commerce in the US (annual average) contain at least 12.95 billion gallons of renewable fuels by the year 2010. Ethanol is the most prevalent renewable fuel, with the US producing over 6 billion gallons in 2007 (Peterson and Ingram, 2008, Ann. N.Y. Acad. Sci., 1125:363-372) and 9 billion gallons in 2009. Currently, the majority of ethanol is produced from corn; however, limited supply will force ethanol production from other sources of biomass, of which the US produces over a billion tons annually—enough to produce 80 billion gallons of renewable fuel (Gray et al., 2006, Bioethanol. Curr. Opin. Chem. Biol., 10:141). Moreover, use of wast...

Claims

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Application Information

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IPC IPC(8): C12P7/14C12N9/24
CPCC12N9/2465C12P7/06C12P7/14Y02E50/17C12Y302/01015Y02E50/10
Inventor DORAN PETERSON, JOY
Owner UNIV OF GEORGIA RES FOUND INC
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