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Method and kit for detecting mutation of K-ras gene

A kit and gene technology, applied in the field of molecular biology, can solve the problems of high false positives, increased risk of adverse reactions and treatment costs, and the inability of K-ras mutant patients to benefit, so as to shorten the detection time and reduce the cost. , the effect of the simple method

Active Publication Date: 2012-04-04
苏州科贝生物技术有限公司
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

In June 2008, the latest clinical research results were released at the American Society of Clinical Oncology (ASCO) annual meeting, that is, patients with K-ras mutations do not benefit from anti-EGFR therapy, but instead increase the risk of adverse reactions and treatment costs; and K-ras wild-type patients are likely to benefit from this type of drug treatment
The false negatives obtained by the above different methods are different, but the common low-fidelity polymerase without correction function makes all these methods have their structural defects, that is, they inevitably produce high false positives
However, the currently routinely used Sanger enzymatic sequencing, that is, single-base extension reaction mediated by dideoxynucleotides, can detect azyme with low mutation content, mitochondrial heteroplasm with few mutations, somatic mutation and frequency distribution. Low DNA pool analysis are difficult to apply

Method used

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  • Method and kit for detecting mutation of K-ras gene
  • Method and kit for detecting mutation of K-ras gene
  • Method and kit for detecting mutation of K-ras gene

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0027] Example 1: Preparation of K-ras wild-type and mutant plasmid DNA, the specific steps are as follows:

[0028] 1) Use conventional methods to extract genomic DNA from human whole blood samples. DNA sequencing proves that the samples are wild-type k-ras. The sequencing results are as follows figure 1 Shown.

[0029] 2) Design and prepare the primers for the three point mutation templates at codons 12 and 13 of the k-ras gene: primer A pair and primer pair B, primer pair C and primer pair D, primer pair E and primer pair F, The sequence is as follows:

[0030] Among them, the primer pair A includes the forward primer T1k-rasmut and the reverse primer T3k-rasmut, which amplify the upstream primer of the mutation template; the primer pair B includes the forward primer T4k-rasmut and the reverse primer T2k-rasmut, and the downstream primer of the amplified mutation template Primers; primer pair A and primer pair B amplify the mutation template of codon k-ras12 GGT-GTT.

[0031] Amo...

Embodiment 2

[0042] Embodiment 2: Detection of k-ras wild-type samples and k-ras mutant samples.

[0043] 1) Use conventional methods to extract genomic DNA from human whole blood samples. DNA sequencing proves that the samples are wild-type k-ras. The sequencing results are as follows figure 1 As shown, this was used as the K-ras wild-type sample.

[0044] 2) DNA is extracted from tumor tissue, and DNA sequencing has at least one of the three hotspot mutations. The DNA sequencing proved to be K-ras mutant. See the sequencing results figure 2 , image 3 , Use this as a K-ras mutant sample.

[0045] 3) Use the three positive plasmid templates obtained in the examples to test the sensitivity and specificity of the kit and its specific primers. The kit includes: conventional PCR components and specific primers; the specificity includes three A forward primer and a reverse primer, wherein the sequences of the three forward primers respectively have the nucleotide sequence shown in SEQ ID No. 1, SE...

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Abstract

The invention discloses a method and kit for detecting the mutation of a K-ras gene by using PCR (Polymerase Chain Reaction) amplification, belonging to the field of molecular biology. The kit comprises a conventional PCR assembly and a specific primer, and the specific primer comprises three forward primers and one reverse primer, wherein the sequences of the three forward primers respectively have nucleotide sequences represented by SEQ ID No.1, SEQ ID No.2 and SEQ ID No.3; and the reverse primer has a nucleotide sequence represented by SEQ ID No.4. The existence of a target product band of PCR amplification through electrophoretic separation is used for judging whether the K-ras gene has at least one of three hot spot mutations including GGT-GAT and GGT-GTT of No.12 codon and GGC-GAC of No.13 codon. The kit and the method for detecting the mutation of a K-ras gene provided by the invention have the advantages of quickness, accuracy, simple method and low cost, in favor of clinic application and popularization.

Description

Technical field [0001] The invention belongs to the field of molecular biology, and relates to a method and a kit for detecting K-ras gene mutations by PCR amplification. Background technique [0002] K-ras gene is an important proto-oncogene. The mutation of K-ras gene keeps the ras protein in an activated state, which stimulates the continuous growth or differentiation of cells, and ultimately leads to malignant transformation of cells. K-ras gene mutations occur in approximately 30% of human tumor cells. Bosetal analyzed the incidence of K-ras gene point mutations in human tumors. Pancreatic cancer 82%, colon cancer 43%, lung cancer 30%c, thyroid cancer 29%, bladder, liver, kidney and uterine cancer 10% or less %. Mok et al. reported that the incidence of K-ras mutations in borderline tumors was 48%, and the mutations occurred in codon 12 and codon 13, respectively. The point mutation rate of K-ras gene in colorectal cancer is more than 40%-50%, and the point mutations are ...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12N15/11
Inventor 李凯张佳王庆琳肖莉王伟大姬云
Owner 苏州科贝生物技术有限公司
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