Primer and method for carrying out specific detection and absolute quantification on tomato spotted wilt virus
A technology of tomato spotted wilt virus and spotted wilt virus, applied in biochemical equipment and methods, microbe measurement/testing, DNA/RNA fragments, etc., to achieve high sensitivity, prevent economic loss, and save time
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Embodiment 1
[0059] Embodiment 1, design and synthesis of primers
[0060] Step 1: Primer Design
[0061] According to the TSWV gene sequence reported in the GENBANK database, after downloading as many TSWV sequences as possible (such as JN601525.1), use DNAMAN software for sequence comparison analysis; find the virus-specific and conserved regions of different strains and design primers (Table 1 ), the primers were synthesized by Shanghai Sangon Co., Ltd.
[0062] The target fragment primers are:
[0063] TSWV-482F: 5'-TCTGGTAGCATTCAACTTCA-3',
[0064] TSWV-482R: 5'-CTTCTCTGGTGTCATACTTCT-3'.
[0065] The fluorescent quantitative primers are: TSWV-113F: CTTGCCATAATGCTGGGAGGTAG, TSWV-113R: TCCCGAGGTCTTTGTATTTTGC.
[0066] Table 1 Primers used in this experiment
[0067]
[0068] Step 2: Specificity verification of specific primers TSWV-482F / TSWV-482R:
[0069] Material:
[0070] Fresh datura leaves with TSWV,
[0071] Pepper leaves in the greenhouse of Institute of Vegetable and ...
Embodiment 2
[0081] Embodiment 2, the preparation of target fragment PCR amplification and plasmid standard
[0082] (1) Extraction of plant total RNA, synthesis of cDNA first strand and amplification of target fragments
[0083] Datura datura leaves with TSWV were used as the material, and the cDNA of Datura datura leaves with TSWV was prepared by the method in step 2 of Example 2, verified by PCR amplification, and the positive cDNA samples were quantified to 1ug / ul, and stored at -80°C for later use .
[0084] (2) Preparation of plasmid standard
[0085] The target fragment of the positive sample amplified in step (1) is recovered and purified, and cloned into pMD TM Place on 18-T carrier, place on ice for 30min, add 50ul transT1 competent cells, then add 500uL LB medium without ampicillin, culture with shaking at 37°C, recover for 1h, on solid LB agar containing X-Gal, IPTG and ampicillin Cultivate overnight on the plate; select white single colonies, add 3ml of LB liquid medium con...
Embodiment 3
[0086] Embodiment 3, the establishment of TSWV real-time fluorescent quantitative PCR method
[0087] (1) Gradient PCR to verify the specificity of fluorescent quantitative primers
[0088] The fluorescent quantitative primer (113bp) used in this experiment was designed in the region of the target gene fragment (482bp).
[0089] The extracted TSWV Datura leaf RNA was reverse-transcribed and RT-PCR amplified with fluorescent quantitative primers. Step is the same as step 2 of embodiment 1. The annealing temperature in the PCR program was set to 8 gradients: 65°C, 64.5°C, 63.5°C, 62°C, 60.2°C, 58.9°C, 57.8°C, 57.0°C.
[0090] Take 10uL of the amplification product and electrophoresis with 2% agarose gel in TBE buffer, the result is as follows figure 2 , PCR products at 8 annealing temperatures were all single bands of 113bp, indicating that the fluorescent quantitative primers had strong specificity. The PCR product was sent to Beijing Qingke Xinye Biotechnology Co., Ltd. f...
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