PCR (polymerase chain reaction) product melting point analysis method for quantitatively detecting species composition of mixed-type sample

A quantitative detection and quantitative analysis technology, which is applied in the determination/testing of microorganisms, biochemical equipment and methods, etc., can solve the problems of exacerbating negative effects, increasing specific primer interference, and difficult steps, so as to overcome errors and ensure specific detection , Create simple and fast effects

Inactive Publication Date: 2015-02-04
OCEAN UNIV OF CHINA
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  • Description
  • Claims
  • Application Information

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Problems solved by technology

If we can invent a method that can improve sensitivity and specificity at the same time, and overcome the key problems of poor reproducibility, false positives and false negatives, etc. Nucleic acid detection provides theoretical basis and technical support, and will have broad application prospects and huge market potential in various biological monitoring fields
[0004] In recent years, many PCR quantitative detection methods have made varying degrees of progress in both sensitivity and specificity, but it is still difficult to achieve both sensitivity and ...

Method used

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  • PCR (polymerase chain reaction) product melting point analysis method for quantitatively detecting species composition of mixed-type sample
  • PCR (polymerase chain reaction) product melting point analysis method for quantitatively detecting species composition of mixed-type sample
  • PCR (polymerase chain reaction) product melting point analysis method for quantitatively detecting species composition of mixed-type sample

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Experimental program
Comparison scheme
Effect test

Embodiment 1

[0024] Embodiment 1 Albacore tuna and yellowfin tuna mixed sample

[0025] 1. Preparation of mixed samples with known component ratios and DNA extraction of mixed samples

[0026] The muscles of albacore tuna (Thunnus Alalunga, Albacore) and yellowfin tuna (Thunnus Albacares, Yellowfin tuna) were ground separately, mixed in a certain ratio and then ground to prepare a series of mixed samples with different mass ratios. DNA was extracted from the mixed sample, and DNA concentration and purity were determined using NanoDrop2000 (Thermo Scientific).

[0027] 2. Design of specific primers

[0028] Select the part of the ND4 gene encoding the hydrogenated coenzyme I dehydrogenase subunit in the mitochondria to design specific primers, and make the difference site at the key position of the primer extension, and use Primer Premier 6.0 software to match the primers. Performance is evaluated. Considering the GC content and length difference of the target fragment amplified by the p...

Embodiment 2

[0035] Example 2 Mixed samples of corn and sunflower

[0036] 1. Preparation of mixed samples with known component ratios and DNA extraction of mixed samples

[0037]Corn (Maize) and sunflower (Sunflower) germs were ground separately, mixed in a certain ratio and then ground to prepare a series of mixed samples with different mass ratios. DNA was extracted from the mixed sample, and DNA concentration and purity were determined using NanoDrop2000 (Thermo Scientific).

[0038] 2. Design of specific primers

[0039] The endogenous specific genes of maize and sunflower (maize zSSIIb gene, sunflower Helianthinin gene) were selected and specific primers were designed using Primer Premier6.0 software. And fully consider the difference in GC content and length of the target fragment obtained by primer amplification, and use ENDMEMO DNA T m Calculator estimates two target products T m Whether the value differs by more than 1.2°C. See Table 2 for the primer sequences and the GC co...

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Abstract

The invention discloses a PCR (polymerase chain reaction) product melting point analysis method for quantitatively detecting species composition of a mixed-type sample. The method comprises the following steps: carrying out primer design by using genes with moderate evolutionary rate of each species in the mixed sample; optimizing multiplex PCR conditions according to single PCR of the corresponding template and primers; carrying out amplification on different sample DNAs (deoxyribonucleic acids) with known component content under the optimized conditions; determining the melting curve of the multiplex PCR product to obtain the melting peak-to-peak height value of the corresponding component, and drawing a standard curve according to the peak height ratio and corresponding sample component content ratio; and for the sample with unknown component content ratio, carrying out amplification and melting curve determination under the same conditions to obtain the peak height ratio, and calculating the corresponding component content ratio according to the standard curve. The method is simple and quick, is low in cost, does not need to detect all the templates to be detected on the basis of the high-quality standard curve, and implements quantitative analysis on the species or components in the mixed-type sample.

Description

technical field [0001] The invention relates to a detection method for various species in a mixed sample, in particular to a PCR product melting point analysis method for quantitatively detecting the species composition of a mixed sample. Background technique [0002] Many biological species have great differences in the degree of protection, potential allergen types, quality and commodity value; due to the insignificant difference in morphological characteristics between similar species or the difficulty in identifying species due to post-processing damage to morphological characteristics, these are all The differential application of its grades and the implementation of special protection measures cause serious obstacles, and it is also a great test for the detection level of the detection method. In particular, the detection of closely related species poses great challenges to the specificity and sensitivity of molecular detection methods. At present, the identification ...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12Q1/06
CPCC12Q1/6851
Inventor 梁兴国贾秀双王静
Owner OCEAN UNIV OF CHINA
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