Primer, probe and detection reagent kit for detecting RET fusion gene
A detection kit and fusion gene technology, which are applied in the determination/inspection of microorganisms, biochemical equipment and methods, DNA/RNA fragments, etc., can solve the problems of poor specificity of FISH detection, affecting detection accuracy, and high reagent cost
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Embodiment 1
[0184] Using the system of the present invention to detect plasmids, plasmid templates for experiments (containing KIF5B-15 and RET-12 gene fusions), and using the above fluorescent PCR to detect RET gene fusion mutations are as follows:
[0185] (1) Plasmid treatment and extraction
[0186] The plasmid was extracted using the plasmid extraction kit of TIANGEN (HighPure Plasmid kid, DP116), and the specific extraction steps were performed according to the instructions of the kit. The extracted DNA was dissolved in Tris-HCl (10mM, pH 8.0), and the quality of the extraction was detected by a UV spectrophotometer to determine its concentration, and then the DNA concentration was adjusted to 20ng / ul with Tris-HCl (10mM, pH 8.0) solution as a diluted mother solution .
[0187] According to formula C 拷贝浓度 =(C 质量浓度 X6.02X10 23 ) / MW DNA Dilute wild-type plasmid to 10 6 copies / microliter.
[0188] (2) Establish PCR amplification reaction system:
[0189] The cDNA template obtai...
Embodiment 2
[0212] Using the present invention to detect clinical samples, 130 clinical lung cancer paraffin-embedded tissue samples to be tested were taken and sent, including 81 males and 49 females, aged 35-76 years, with an average age of 55 years and a median age of 51 years. Utilize specific primer of the present invention and probe fluorescent PCR system to detect the gene fusion mutation step of the RET of 130 cases of clinical samples as follows:
[0213] (1) Sample processing and RNA extraction
[0214]a. Take about 1×1 cm2 slices of each lung cancer sample (about 4-5 slices in total) and place them in a centrifuge tube (prepared by yourself), add 1 ml of xylene, cap the tube tightly, and vortex for 10 seconds.
[0215] b. Centrifuge at 12,000 rpm (~13,400×g) for 2 minutes, carefully aspirate and discard the supernatant, and be careful not to aspirate and discard the sediment. c. Add 1 ml of absolute ethanol and vortex to mix. Centrifuge at 12,000 rpm for 2 minutes, discar...
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