Primers, probes, detection system and kit for one time detection of lung cancer multiple genes
A one-time, lung cancer technology, applied in biochemical equipment and methods, recombinant DNA technology, microbial measurement/inspection, etc., can solve the problems of difficult material collection, small sample size, and long time-consuming for advanced patients
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Embodiment 1
[0089] According to the wild-type gene sequences of human EGFR, KRAS, BRA, ALK and ROS1 published by Cosmic data, specific primers and and new probes (see Table 1).
[0090] In this example, EML4exon13; ALK exon20 (ALK fusion gene), SLC34A2exon14del; ROS1exon32 (ROS1 fusion gene), TPM3exon8; ROS1exon35 (ROS1 fusion gene), E746_A750del (2235_2249del15) (EGFR gene mutation), L858R (EGFR gene mutation), T790M (EGFR gene mutation), G719A (EGFR gene mutation), G12S (KRAS gene mutation), G12C (KRAS gene mutation), G13D (KRAS gene mutation), V600E (BRAF gene mutation) are examples to illustrate the fluorescent PCR of the present invention Detection of the above lung cancer genes.
[0091] The experiment uses the armored RNA containing the above-mentioned fusion gene and the plasmid template of each mutation respectively, and its fluorescent PCR detection includes the following steps:
[0092] (1) Treatment and extraction of plasmids and armored RNA:
[0093] The extraction of each...
Embodiment 2
[0124] From December 2013 to April 2014, 65 clinical lung cancer paraffin-embedded tissue samples sent to our company were taken for one-time multiple lung cancer gene mutation detection.
[0125] 1. Extraction of DNA and RNA from test samples: DNA and RNA can be extracted using the FFPE sample DNA / RNA co-separation kit from Xiamen Aide Biomedical Technology Co., Ltd. ), Cat No.ADx-FF03 or QIAGEN Paraffin Tissue DNA Extraction Kit, Cat No.56404; follow the instructions of the extraction kit. Immediately after DNA and RNA extraction, use a UV spectrophotometer to detect the concentration and purity of DNA and RNA. DNA and RNA OD260 / OD280 should be between 1.8 and 2.1; RNA concentration should be between 50 and 500 ng / μL. The DNA and RNA extracted above were used as templates for fluorescent PCR amplification of lung cancer genes.
[0126] 2. The above-mentioned DNA and RNA were subjected to PCR amplification according to the following amplification system:
[0127] ① fusion ...
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