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Identification method of soybean rhizobium strain 5873 pcr, its primers and application

A technology of 5873PCR and soybean rhizobia, which is applied in biochemical equipment and methods, microbial measurement/testing, DNA/RNA fragments, etc., can solve the problems of intellectual property protection of unfavorable production strains, cumbersome process, poor repeatability, etc.

Active Publication Date: 2022-05-13
INST OF AGRI RESOURCES & REGIONAL PLANNING CHINESE ACADEMY OF AGRI SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

In view of the fact that similar species of soybean rhizobia have similar colony morphology, we usually rely on basic physiological and biochemical reactions in combination with conserved sequences such as 16S rRNA, atpD, glnII, recA, gyrB and rpoB genes to identify the species, and the results are usually also It can only be distinguished at the species level, but cannot be identified at the strain level, which is not conducive to the protection of intellectual property rights of the production strains
Taking bradyrhizobia as an example, there is no strain-level PCR rapid detection technology, especially B. japonicum E109 and B. japonicum USDA 6, which are commonly used in domestic and foreign research and industrial applications. T , at the genome-wide level, we only found 3 SNP differences, which are difficult to distinguish by conventional technical means
In addition, at the application level, the nodulation rate is an important indicator for evaluating the nodulation ability of rhizobia after inoculation. It is usually determined by BOX-PCR technology. Although this method can distinguish species or some strains, the process is cumbersome and complicated. poor repeatability

Method used

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  • Identification method of soybean rhizobium strain 5873 pcr, its primers and application
  • Identification method of soybean rhizobium strain 5873 pcr, its primers and application
  • Identification method of soybean rhizobium strain 5873 pcr, its primers and application

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Embodiment 1

[0045] Example 1: Soybean Rhizobium strain 5873 PCR identification method:

[0046] 1. Materials and methods:

[0047] 1.1 Materials:

[0048]1.1.1 Tested strains: The excellent soybean rhizobium strain 5873 screened in the early stage of the experiment was selected as the target strain, and 42 strains of Bradyrhizobium, 2 strains of Sinorhizobium and 1 strain of Rhizobium were isolated and preserved in the laboratory. The strain was used as a reference strain, combined with all sequences in the NCBI database, for primer design and specificity verification. See Table 1 for the reference strains and numbers:

[0049] Table 1 Reference strains

[0050]

[0051] 1.1.2 Main reagents and instruments: bacterial genomic DNA extraction kit (Tiangen Biochemical Technology Beijing Co., Ltd.); Fast-T1 chemically competent cells, 5min TM TA / Blunt-Zero Cloning Kit, Fast Pure Gel DNAExtraction Mini Kit, Fast Pure Plasmid Mini Kit, etc. were purchased from Nanjing Novozyme Biotechno...

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Abstract

The invention relates to a PCR identification method for soybean rhizobium strain 5873, primers used therefor and applications, belonging to the technical field of bacterial strain identification. The method comprises: using the genomic DNA of the bacterial strain to be tested or the pure culture bacterial liquid of the bacterial strain or the root nodule crushing extract after cracking, boiling water bath, and freeze-thawed liquid as a template, and performing PCR amplification with primer 4-4; Perform electrophoresis on the PCR product, and if there is no band of about 355bp, it is not soybean rhizobium strain 5873; if there is a band of about 355bp, continue to use primer Q1 for PCR amplification of the strain to be tested; perform electrophoresis on the above product, and there is a band of about 218bp Soybean Rhizobium strain 5873. The present invention has the following advantages: In terms of strain identification and evaluation, soybean rhizobia strain 5873 can be easily and quickly distinguished, and bacteria or nodules can be directly used as templates, eliminating the cumbersome separation, cultivation, and DNA extraction and identification of nodules. link.

Description

technical field [0001] The invention belongs to the technical field of strain identification, and in particular relates to a PCR identification method of soybean rhizobium strain 5873, primers used therein and applications. Background technique [0002] With the adjustment of the country's agricultural strategy, the development of resource-saving and environment-friendly "two-type agriculture" has become the only way for the sustainable development of modern agriculture. Among them, microbial fertilizers including rhizobia, as new green inputs and priority biological products, can not only repair and improve soil, reduce weight and increase efficiency, but also perform outstandingly in improving crop quality and efficiency. The action plan of reducing one increase provides an important guarantee for the realization of the goal of "one control, two reductions and three basics". [0003] As an important functional strain in microbial fertilizer products, soybean rhizobia can ...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/689C12Q1/686C12Q1/04C12N15/11
CPCC12Q1/689C12Q1/686C12Q2565/125
Inventor 马鸣超姜昕李俊王鹏辉关大伟曹凤明李力
Owner INST OF AGRI RESOURCES & REGIONAL PLANNING CHINESE ACADEMY OF AGRI SCI
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