Microfluidic Devices and Methods of Use in The Formation and Control of Nanoreactors

a microfluidic device and nanoreactor technology, applied in the field of fluidic species system and method control, can solve the problems of limiting the hts capacity, limiting the smallest volume of reagent that can effectively be used, and surface adsorption of reactants

Inactive Publication Date: 2010-06-03
BIO RAD LAB INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Benefits of technology

[0009]The present invention provides devices having individual fluid handling modules that can be combined into fluid processing systems so as to perform multi-step processing of isolated components, which is essential for searching through molecular libraries for rare interactions with cells, nucleic acids, enzymes, coded microbeads, and other biomaterials. Using principles based on the electrostatic and dielectrophoretic manipulation of charged and neutral droplets 20 to 100 microns in diameter, the microfluidic devices as described herein can inexpensively encapsulate reagents, combine same, analyze, and sort in the range of 1×109 droplets per day. The present invention provides a microfluidic device that includes a microfabricated substrate. The substrate can include a plurality of electrically addressable channel bearing microfluidic modules integrally arranged with each other so as to be in fluid communication. The microfabricated substrate can have, for example, (i) one or mor...

Problems solved by technology

However, there are still bottlenecks which currently limit HTS capacity, such as (a) compound collection maintenance, tracking, and disbursement, and (b) rapidity, accuracy, and content of assay instrumentation.
However, virtually all microfluidic devices are based on flows of streams of fluids; this sets a limit on the smallest volume of reagent that can effectively be used because of the contaminating effects of diffusion and surface adsorption.
As the dimensions of small volumes shrink, diffusion becomes the dominant mechanism for mixing leading to dispersion of reactants; moreover, surface adsorption of reactants, while small, can be highly detrimental when the concentrations are low and volumes are small.
As a result, current microfluidic technologies cannot be reliably used for applications involving minute quantities of reagent; for example, bioassays on single cells or library searches involving single beads are not easily performed.
However, essentially all enabling technology for microfluidic systems developed thus far has focused on single phase ...

Method used

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example 1

[0208]The device of the present invention can be used for Live / Dead Cell Based Assays. In one example, the assay uses two fluorophores; one is permeable across cell membranes, and a second dye binds DNA and can enter the cell only if the membrane is compromised. Similar Live / Dead assays exist for bacteria and yeast. Tagged chemical libraries and photocleavable linkers can be used in such assays. Combinatorial one-bead-one-compound libraries obtained through split-bead synthesis require a tag which describes their synthetic history in order to identify the compound reliably. Several encoding technologies for microcarriers such as beads, rods and crowns have been developed over the last decade to address this need. A simple and effective method relies on spectrometric chemical tags which are generated in parallel to the chemical entity of interested utilizing orthogonal chemistry. Alternatives include the use of nucleic acids such as DNA, followed by the use of the polymerase chain re...

example 2

[0229]The present invention provides methods for performing polymerase chain reaction in nanoreactors of the present invention as described. PCR can be performed on a drop-by-drop basis in a microfluidic device according to the present invention. A monolithic chip can be provided wherein the heating and cooling lines are built into the chip and a sorting means is provided. Advantages of performing PCR in droplets on such a chip are that the chip is disposable and the reaction can be repeated without cleaning the device between reactions. Furthermore, the chip provides a convenient way of getting all the components to perform PCR in the droplets in the right concentration. Additionally, the PCR is more efficient because the heat transfer is more efficient due to the small volume. This provides for shorter incubation / residence times. Droplets containing the nucleic acids, all PCR primers, and, if present, beads are generated one at a time at rates between 100 and 20,000 droplets per s...

example 3

[0234]The device of the present invention can be used to screen chemical libraries composed of at least 106 molecules against an established cell line. In this manner, positive and negative nanoreactors can be tracked and sorted using either a nucleic-acid based, or multi-colored bead-based encoding scheme For example, a control library with known hits can be screened against a human cancer cell line.

[0235]In one embodiment, a chemical library can be screened using a nanoreactor as described in detail herein. The power of the present invention comes from a combination of compartmentalization and electrical manipulation that enables multi-step chemical processing, including analysis and sorting, to be initiated in confinement with exquisite timing and metering precision. This multi-step processing of isolated components is essential for searching through molecular libraries for rare interactions with cells, nucleic acids, enzymes, coded microbeads, and other biomaterials. For example...

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Abstract

The present invention provides novel microfluidic devices and methods that are useful for performing high-throughput screening assays and combinatorial chemistry. Such methods can include labeling a library of compounds by emulsifying aqueous solutions of the compounds and aqueous solutions of unique liquid labels on a microfluidic device, which includes a plurality of electrically addressable, channel bearing fluidic modules integrally arranged on a microfabricated substrate such that a continuous channel is provided for flow of immiscible fluids, whereby each compound is labeled with a unique liquid label, pooling the labeled emulsions, coalescing the labeled emulsions with emulsions containing a specific cell or enzyme, thereby forming a nanoreactor, screening the nanoreactors for a desirable reaction between the contents of the nanoreactor, and decoding the liquid label, thereby identifying a single compound from a library of compounds.

Description

FIELD OF INVENTION[0001]The present invention generally relates to systems and methods for the formation and / or control of fluidic species, and articles produced by such systems and methods. More particularly, the present invention relates to the development of high throughput microfluidic devices for precision fluid handling and use of such systems in various biological, chemical, or diagnostic assays.BACKGROUND[0002]High throughput molecular screening (HTS) is the automated, rapid testing of thousands of distinct small molecules or probes in cellular models of biological mechanisms or disease, or in biochemical or pharmacological assays. Active compounds identified through HTS can provide powerful research tools to elucidate biological processes through chemical genetic approaches, or can form the basis of therapeutics or imaging agent development programs. HTS has experienced revolutionary changes in technology since the advent of molecular biology and combinatorial chemistry, an...

Claims

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Application Information

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IPC IPC(8): C40B40/06C40B60/14C40B60/08C40B50/14
CPCB01F13/0071C12Q1/686B01J19/0046B01J2219/00286B01J2219/00459B01J2219/00466B01J2219/00468B01J2219/005B01J2219/00576B01J2219/00599B01J2219/00702B01J2219/0072B01J2219/00743B01L3/502746B01L3/502784B01L3/565B01L7/52B01L2200/027B01L2200/0621B01L2200/0647B01L2200/0673B01L2300/0816B01L2300/0864B01L2300/0867B01L2300/0896B01L2400/0415B01L2400/0424B01L2400/0487B01L2400/084B82Y5/00B82Y30/00C07K1/047C12Q1/6869C40B30/04C40B40/04C40B50/08C40B60/08C40B60/12C40B70/00G01N33/536G01N33/6845G01N33/6854C12Q1/6874G01N33/543C12Q1/6876C12Q2600/16B01F13/0076C12N15/1075C12Q2563/159C12Q2565/629B01J2219/00479G01N35/08B01F33/3021B01F33/3031B01L3/50273B01L3/5027B01L3/502792B01L3/502761C12Q2525/161G01N33/542C12Q2561/119G01N21/6428C12Q2563/103G01N21/6445C12Q2563/107C12Q1/6816C12Q1/6804G01N21/6458B01L2200/0652G01N2500/10C12Q1/6834C12Q1/6825C12Q2565/537B01L3/502715B01F23/41
Inventor LINK, DARREN R.BOITARD, LAURENTBRANCIFORTE, JEFFREYCHARLES, YVESFEKE, GILBERTLU, JOHN Q.MARRAN, DAVIDTABATABAI, AHMADALIWEINER, MICHAELHINZ, WOLFGANGROTHBERG, JONATHAN M.
Owner BIO RAD LAB INC
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