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Method for preparing detection chip and method for detecting pathogens using the chip

A detection chip and chip technology, applied in the field of nucleic acid detection of pathogenic microorganisms, can solve the problems of high background signal, fluorescence quenching, false positive results, etc.

Inactive Publication Date: 2012-02-01
ZHEJIANG UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

At present, there are already some chips used for food testing. However, these chips also have the following shortcomings and deficiencies: 1. Although high-throughput detection of pathogens can be achieved, generally one chip can only detect all pathogens in one sample; 2. At present, there are generally two types of fluorescent labels. One is to add Cy-dCTP while amplifying. However, since Cy is a large molecule and has a large steric hindrance, it is not easy to combine during the chain extension process; the other The first method is to synthesize primers with fluorescent groups first. This method also has relatively large disadvantages: first, primers with fluorescence are not easy to store, and fluorescence quenching will occur after a long time; secondly, the price of synthesizing primers with fluorescence is relatively low. Expensive, and different primers are needed to amplify different genes, so many fluorescent primers need to be synthesized; finally, because the primers are fluorescent, once purified, or the washing steps are not done well, false positives will appear in the results, or Locally high background signal, etc.

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  • Method for preparing detection chip and method for detecting pathogens using the chip
  • Method for preparing detection chip and method for detecting pathogens using the chip
  • Method for preparing detection chip and method for detecting pathogens using the chip

Examples

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Embodiment 1

[0057] Embodiment 1. A method for preparing a detection chip, the following steps are performed in sequence:

[0058] 1) Design of oligonucleotide probes for bacteria:

[0059] The genomic sequences of 7 species of Escherichia coli, Lactobacillus, Salmonella, Shigella, Staphylococcus aureus, mold and yeast were obtained from the NCBI database, and then designed using Arraydesigner4.2 software. The specific probe sequences obtained are shown in the table 1 shown.

[0060] Each type of bacteria uses all the probes shown in Table 1, that is, E. coli selects the 4 probes shown in SEQ ID NO: 1 to SEQ ID NO: 4, and the rest of the bacteria can be deduced by analogy.

[0061] 2). Chip preparation:

[0062] Choose 28 probes shown in Table 1, and 1 negative (sequence:

[0063] 5-CTCAATCCTTTGGGTGTATGGGTCGTAGCGAACTGAGAAGGGCCGAGGTATTGTGGCA-3), 1 positive probe (GAPDH:

[0064] 5-GTCCAGTTAATTTCTGACCTTTACTCCTGCCCTTTGAGTTTGATGATGCTGAGTGTAC-3), a total of 30 probes. Each probe is spotted twice. There ...

Embodiment 2

[0066] Example 2. A method for detecting pathogens in multiple food samples. The detection chip obtained in Example 1 is selected and the following steps are performed in sequence:

[0067] 1) Design primers:

[0068] From the NCBI database, obtain the genomic sequences of E. coli, lactic acid bacteria, Salmonella, Shigella, Staphylococcus aureus, mold and yeast, and then use primer5.5 software to design the primers corresponding to each of the above bacteria The sequence is shown in Table 2.

[0069] 2) Extraction of DNA from the sample to be tested, using 12 types of emulsions or liquid dairy products as the sample to be tested, and each sample to be tested is carried out in sequence as follows:

[0070] ① Take 50ml sample, centrifuge at 1000-2000rpm for 20min at 4℃, discard the upper suspended matter;

[0071] ② Add 10ml PBS, shake gently to resuspend the pellet, centrifuge at 1000-2000rpm at 4℃ for 20min, discard the upper suspension;

[0072] ③ Repeat 2) to remove milk fat and milk...

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Abstract

The invention discloses a method for preparing a detection chip, which comprises the following steps: 1) designing a bacterial oligonucleotide probe; 2) preparing the chip. The present invention also discloses a method for detecting pathogens in a plurality of food samples by using the detection chip at the same time, comprising the following steps: 1) designing primers; 2) extracting DNA from samples to be tested to obtain extracts; 3) multiplex PCR of target genes Amplification; 4) chip hybridization detection; 5) detection and analysis of hybridization results. The detection method of the invention has simple steps, is easy to operate, and has a high detection result accuracy rate.

Description

Technical field [0001] The invention belongs to the detection technology of microorganisms, especially the nucleic acid detection technology of pathogenic microorganisms in milk and dairy products; in particular, it relates to a method and chip used for detecting pathogens in 12 food samples at the same time. Background technique [0002] Food-borne pathogens often cause mass injuries and cause certain harm to people's health, lives and property. According to an incomplete statistical report of the World Health Organization (WHO), 2.1 million people worldwide died of diarrhea in 2000, mostly due to the contamination of pathogenic bacteria in food and drinking water. According to statistics from the Ministry of Health, a total of 150 major food reports were received in 2000, resulting in 6,237 people being poisoned and 135 deaths; in 2001, a total of 185 major food poisoning incidents occurred, resulting in 15,715 people being poisoned and 146 deaths. [0003] The basis for judging...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/68C12Q1/04
Inventor 洪旭涛杨华陈伟光袁谦邵晖项春生
Owner ZHEJIANG UNIV