Method for preparing detection chip and method for detecting pathogens using the chip
A detection chip and chip technology, applied in the field of nucleic acid detection of pathogenic microorganisms, can solve the problems of high background signal, fluorescence quenching, false positive results, etc.
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Embodiment 1
[0057] Embodiment 1. A method for preparing a detection chip, the following steps are performed in sequence:
[0058] 1) Design of oligonucleotide probes for bacteria:
[0059] The genomic sequences of 7 species of Escherichia coli, Lactobacillus, Salmonella, Shigella, Staphylococcus aureus, mold and yeast were obtained from the NCBI database, and then designed using Arraydesigner4.2 software. The specific probe sequences obtained are shown in the table 1 shown.
[0060] Each type of bacteria uses all the probes shown in Table 1, that is, E. coli selects the 4 probes shown in SEQ ID NO: 1 to SEQ ID NO: 4, and the rest of the bacteria can be deduced by analogy.
[0061] 2). Chip preparation:
[0062] Choose 28 probes shown in Table 1, and 1 negative (sequence:
[0063] 5-CTCAATCCTTTGGGTGTATGGGTCGTAGCGAACTGAGAAGGGCCGAGGTATTGTGGCA-3), 1 positive probe (GAPDH:
[0064] 5-GTCCAGTTAATTTCTGACCTTTACTCCTGCCCTTTGAGTTTGATGATGCTGAGTGTAC-3), a total of 30 probes. Each probe is spotted twice. There ...
Embodiment 2
[0066] Example 2. A method for detecting pathogens in multiple food samples. The detection chip obtained in Example 1 is selected and the following steps are performed in sequence:
[0067] 1) Design primers:
[0068] From the NCBI database, obtain the genomic sequences of E. coli, lactic acid bacteria, Salmonella, Shigella, Staphylococcus aureus, mold and yeast, and then use primer5.5 software to design the primers corresponding to each of the above bacteria The sequence is shown in Table 2.
[0069] 2) Extraction of DNA from the sample to be tested, using 12 types of emulsions or liquid dairy products as the sample to be tested, and each sample to be tested is carried out in sequence as follows:
[0070] ① Take 50ml sample, centrifuge at 1000-2000rpm for 20min at 4℃, discard the upper suspended matter;
[0071] ② Add 10ml PBS, shake gently to resuspend the pellet, centrifuge at 1000-2000rpm at 4℃ for 20min, discard the upper suspension;
[0072] ③ Repeat 2) to remove milk fat and milk...
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