Kit for detecting BRAF gene mutation and detecting method thereof
A kit and gene technology, applied in the direction of biochemical equipment and methods, microbial measurement/inspection, etc., can solve the problems of easy pollution, positive results cannot be confirmed specific unknowns, etc., achieve strong specificity, clear and objective result interpretation, good safety effect
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Embodiment 1
[0037] BRAF gene negative quality control product is BRAF gene unmutated human blood genomic DNA, then diluted to 10ng / μL concentration (the copy number is about 10 3 ). The BRAF gene positive quality control product is connected to the pUC57-Amp vector by the mutation sequence of the BRAF gene V600E mutation site, and then transformed into Escherichia coli, extracted and purified, and then diluted to a concentration of 10 3 Copy number (concentration is about 10 -5 ng / μl). The mutation site information comes from the Cosmic database, and the sequence of the mutation site was synthesized by Suzhou Jinweizhi Biotechnology Co., Ltd. The specific sequence is as follows:
[0038] ttatagaaattagatctcttacctaaactcttcataatgcttgctctgataggaaaatgagatctactgttttcctttacttactacacctcagatatatttcttcatgaagacctcacagtaaaaataggtgattttggtctagctacagagaaatctcgatggagtgggtcccatcagtttgaacagttgtctggatccattttgtggatggtaagaattgaggctatttttccactgattaaatttttggccctgagatgctgctgag。
[0039] Then design primers f...
Embodiment 2
[0057] The minimum detection limit of the BRAF gene V600E mutation site was analyzed using the optimized detection system and reaction program. The research on the minimum detection limit mainly includes the following two aspects: 1) Research on the minimum detection limit of mutation ratio: the ratio of the lowest mutant DNA that can be detected under a certain DNA concentration; 2) Research on the minimum detection limit of DNA concentration: The lowest DNA concentration that can be detected under a certain ratio; 3) The research results of the lowest detection copy number.
[0058] 1) Research on the minimum detection limit of mutation ratio
[0059] First, accurately dilute the V600E mutation positive quality control and Control quality control, and uniformly dilute to 10 3 Copy number, the dilution is 10ng / ul wild-type DNA; then the positive quality control product and 10ng / ul negative genome according to the volume ratio of 0:100, 0.01:99.99, 0.5:99.5, 1:99 and 5:95 Mi...
Embodiment 3
[0076] 10 tissue samples from patients with colorectal cancer and matched preoperative plasma samples were collected from the First Affiliated Hospital of Zhejiang University School of Medicine. Immediately after sample collection, store in a -80°C refrigerator. The DNA in the tissue samples and the free DNA (cf-DNA) in the plasma were extracted using Qiagen kits, and subjected to agarose gel electrophoresis and concentration determination.
[0077] Then use the method of Example 1 to detect the tissue samples of 5 cases of colorectal cancer patients with V600E mutation detected and verified by tissue sequencing method, 5 cases of colorectal cancer patients without V600E mutation detected and verified by tissue sequencing method, and 10 healthy people. and plasma samples, the results are shown in Table 6.
[0078] Table 6, adopt the method of the present invention to detect colorectal cancer patient result
[0079]
[0080]
[0081] Note: "-" means that the sample V600...
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