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Sample pretreatment method for extracting microorganism total DNA in biological aerosol

A sample pretreatment and bioaerosol technology, which is applied in the field of microbial research in air aerosol, can solve the problems of complex buffer configuration process, large DNA loss, large filter membrane area, etc. Effects of poisoning and simplification of operation steps

Active Publication Date: 2016-04-06
BEIJING AGRO BIOTECH RES CENT
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, the first method has a large filter membrane area, which leads to a large amount of DNA loss during the DNA extraction process; although the second method has a small loss during the extraction process, the buffer used in the stripping process, For example, 0.1% TritonX-100 buffer or phosphate buffer containing 0.03% Tween-20 contains organic substances harmful to human health, and the buffer configuration process is complicated and the steps are cumbersome

Method used

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Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0021] Sample collection: Air bioaerosol samples were collected in Beijing Academy of Agriculture and Forestry Sciences. The sampling instrument is a total air particle collector (Qingdao Laoying Environmental Protection Technology Co., Ltd.), and the sampling time is 48 hours. Filter the sampled microorganisms onto a quartz fiber filter membrane with a diameter of 90mm, and then divide the quartz fiber filter membrane into 3 parts.

[0022] Part 1, according to the method of this application, lay the fiber filter membrane that adsorbs bioaerosols flat along the tube wall in a 50ml sterile centrifuge tube, and the filter membrane that does not absorb microorganisms is attached to the centrifuge tube wall, and the particles absorb Face up, making sure the glass beads are in direct contact with the absorbent surface. Add 40 sterile glass beads with a diameter of 5 mm and 0.8% sterile saline, the amount of sterile saline is based on the fiber filter membrane being completely soa...

Embodiment 2

[0027] Sample collection: Air bioaerosol samples were collected in a chicken house in a chicken farm in Beijing. The sampling instrument is a total air particle collector (Qingdao Laoying Environmental Protection Technology Co., Ltd.), and the sampling time is 24 hours.

[0028] Part 1, according to the method of this application, lay the quartz fiber filter membrane that adsorbs bioaerosols flatly along the tube wall in a 50ml sterile centrifuge tube, and the filter membrane that does not absorb microorganisms is attached to the centrifuge tube wall, and the particles absorb Face up, making sure the glass beads are in direct contact with the absorbent surface. , adding 50 sterile glass beads with a diameter of 5mm and 0.8% sterile saline, the amount of sterile saline is based on the fact that the quartz fiber filter membrane is completely soaked and there is any remaining. Fix the centrifuge tube on a constant temperature shaker and process it at 100rpm for 12h. During the ...

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Abstract

The invention relates to a sample pretreatment method for extracting microorganism total DNA in biological aerosol. The method includes the steps that a filter membrane is adopted to collect air microorganisms, 0.8% normal saline is used as a buffer solution, the microorganisms are fully separated under the oscillation action of a shaking table supplemented by glass beads, and membrane stripping liquid is filtered through a 25-mm filter membrane, so that the microorganisms are concentrated on the surface of a membrane with the area of 1.96 cm<2> and oscillated, walls of the microorganisms, with thick cell walls, on the surface of the membrane are broken preliminarily, and follow-up DNA extraction is facilitated. The sample pretreatment method is easy to operate, harmless to the human body and capable of effectively increasing the DNA extraction amount.

Description

technical field [0001] The invention relates to the research field of microorganisms in air aerosols, in particular to a sample pretreatment method for extracting total DNA of microorganisms in bioaerosols. Background technique [0002] Bioaerosols are aerosol particles with life (including microbial particles such as bacteria, fungi, and viruses), active particles (pollen, spores, etc.), and plasmids released into the air by living organisms. Because the concentration of bioaerosols in the air is low, the research on them first needs to collect the biological particles in the air so that the air microorganisms can be enriched. At present, there are three main collection methods: (1) using an impact sampler to make the bioaerosol hit the surface of the selective medium, and use it for subsequent analysis after the target air microorganisms grow; (2) using the sampler to collect the bioaerosol in the air Absorb into the buffer solution, filter the buffer solution with a filt...

Claims

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Application Information

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IPC IPC(8): C12N15/10
Inventor 高敏贾瑞志王旭明仇天雷韩梅琳崔鑫鑫
Owner BEIJING AGRO BIOTECH RES CENT
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