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Kit and detection method for specifically detecting lily cucumber mosaic virus

A technology for lily cucumber and mosaic virus, which is applied in the directions of biochemical equipment and methods, microbial determination/inspection, etc., can solve the problem of high technical requirements, and achieve the effects of improving detection efficiency, reliable results and easy operation.

Pending Publication Date: 2018-10-09
NORTHWEST INST OF ECO-ENVIRONMENT & RESOURCES CAS
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0010] The technical problem to be solved by the present invention is to overcome the defects and deficiencies in the existing lily CMV virus detection method that require high technical requirements and rely on professional instruments and equipment, and provide a method that can specifically and efficiently detect lily cucumber flowers and leaves without the need for molecular biology professional instruments and equipment. The IC-RT-LAMP method for viruses; specifically, the combination of immunology and LAMP technology is ingenious. Firstly, the specific antibody of CMV virus is coated on the wall of the coated container to specifically capture the CMV particles in the detection sample, and thus To concentrate and purify the virus, and then use the captured CMV particles as a template to perform reverse transcription RT reaction and then LAMP reaction to achieve the purpose of detecting lily cucumber mosaic virus

Method used

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  • Kit and detection method for specifically detecting lily cucumber mosaic virus
  • Kit and detection method for specifically detecting lily cucumber mosaic virus
  • Kit and detection method for specifically detecting lily cucumber mosaic virus

Examples

Experimental program
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Effect test

Embodiment 1

[0053] The acquisition of embodiment 1 positive control substance

[0054] 1. Extraction of total RNA

[0055] Grind 50-100 mg of leaves of Lily of Lanzhou infected with CMV in liquid nitrogen, and extract the total RNA of the susceptible tissue with a plant total RNA extraction kit.

[0056] 2. Primer design and synthesis

[0057] A pair of specific forward (CMV-F) and reverse primers (CMV-R) were designed and synthesized based on the lily CMV CP gene sequence registered on GenBank (GenBank accession number: DQ767971). Wherein the above-mentioned primer sequence is as follows:

[0058] CMV-F: 5'-TTCCTGCCTCCTCGGACTTA-3';

[0059] CMV-R: 5'-CACTCCGGACGTGGGAATAC-3'.

[0060] 3. Preparation of positive control substance

[0061] 1) RT reaction

[0062] The first strand of cDNA was synthesized by RT reaction using the reverse primers CMV-R and M-MLV reverse transcriptase of Lily of Lanzhou.

[0063] The 10 μL RT reaction system is as follows: 2 μL total RNA, 10 μM CMV-speci...

Embodiment 2

[0073] Example 2 Establishment of the method for detecting lily CMV by immunocapture IC-RT-LAMP

[0074] 1, the preparation method of rabbit anti-CMV polyclonal antibody IgG among the present invention:

[0075] 1) Purification of CMV natural virus particles: Take 50g of frozen susceptible CMV Lanzhou lily leaves, add 200mL 0.5M, pH7.0 citrate buffer solution containing 0.05% β-mercaptoethanol and 0.01 M EDTA, and place in a frozen mortar Grind until homogenized, filter through 4 layers of gauze, and take the filtrate; add 100mL carbon tetrachloride to the filtrate, shake vigorously, and stir for 15 minutes; centrifuge at 5000g for 15 minutes, keep the supernatant, discard the precipitate; add 7.5% Stir and dissolve PEG 6000 (W / V) and 4% sodium chloride (W / V) and let stand for 30 minutes, then centrifuge at 8000g for 20 minutes; keep the precipitate, resuspend in 0.05M, pH7.0 containing 2% Triton X-100 citrate buffer solution, overnight at 4°C; centrifuge at 10,000g for 20 mi...

Embodiment 3

[0097] Example 3 Specificity of Immunocapture IC-RT-LAMP Detection of CMV

[0098] In order to analyze the specificity of immunocapture IC-RT-LAMP in detecting lily CMV, the leaves susceptible to the three main viruses (CMV, lily recessive virus-LSV and lily mottled virus-LMoV) most commonly infecting lily were taken as samples, respectively. The virions were captured with CMV polyclonal antibody IgG, and reacted with the IC-RT-LAMP detection system in the above examples. The healthy lily leaves were used as the negative control, and the experiment was repeated 3 times.

[0099] The results of agarose gel electrophoresis showed that except for the diffuse nucleic acid bands amplified in the leaves of lilies infected with CMV, no nucleic acid bands were amplified in the other samples. This shows that the IC-RT-LAMP method established by the present invention has good specificity.

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Abstract

The invention provides an IC-RT-LAMP (Immune Capturing-Reverse Transcription-Loop-Mediated Isothermal Amplification) kit and detection method for specifically detecting a lily cucumber mosaic virus CMV. The kit mainly comprises a specific CMV antibody IgG, a specific RT reverse primer CMV-R, a specific LAMP primer group, a first-chain cDNA (complementary Deoxyribonucleic Acid) synthesis reagent, an LAMP amplification reaction reagent, a fluorescent dye detection solution, a negative reference substance and a positive reference substance; the specific LAMP primer group is composed of a frontward outer primer F3, a backward outer primer B3, a frontward inner primer FIP, a backward inner primer BIP, a positive loop primer LF and a backward loop primer LB; the negative reference substance is ddH2O and the positive reference substance is a Lanzhou lily CMV CP gene standard product. According to the kit provided by the invention, RNA (Ribonucleic Acid) does not need to be extracted and molecular biology special instruments and equipment including an enzyme labeling instrument, a PCR instrument or a fluorescent quantitative PCR instrument and the like are not needed; amplification reaction can be finished in a constant-temperature water bath, and the specificity and sensitivity are high; the kit is convenient to operate and has high applicability; the kit can be used for monitoring generation, spreading and prevalence of the lily CMV and is suitable for being popularized and applied in grassroots.

Description

technical field [0001] The invention relates to an IC-RT-LAMP kit for specifically detecting lily cucumber mosaic virus CMV and a detection method thereof. Background technique [0002] Lily is an important economic crop that integrates ornamental, edible and medicinal uses. Long-term asexual reproduction causes the accumulation of viruses, which seriously affects the yield and quality. Among them, cucumber mosaic virus (CMV) is the most common occurrence. One of the viruses, taking edible lily in Lanzhou as an example, the latest field survey results of viral diseases show that the infection rate of CMV reached 42.5% (Zhang et al., 2018). important factor. [0003] CMV is a typical member of the genus Cucumovirus in the Bromoviridae family. It is distributed worldwide, and its host range is found in dicotyledonous and monocotyledonous plants. As many as 1000 species have been elucidated. More than one species; the molecular weight of CMV virus particles is between 5000 an...

Claims

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Application Information

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IPC IPC(8): C12Q1/70C12Q1/6844C12Q1/6804
CPCC12Q1/6804C12Q1/6844C12Q1/701C12Q2531/119C12Q2563/107C12Q2565/531
Inventor 张玉宝王亚军谢忠奎王若愚郭志鸿邱阳何玉惠
Owner NORTHWEST INST OF ECO-ENVIRONMENT & RESOURCES CAS
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