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Nucleic acid fragment sorting and purifying reagent and method

A nucleic acid fragment and purification method technology, applied in the field of nucleic acid fragment separation and purification reagents, can solve problems such as danger, time-consuming, and complicated operation, and achieve high-throughput separation of nucleic acid fragment size, high recovery rate and purity, and simple operation Effect

Active Publication Date: 2019-10-11
杭州千基生物科技有限公司 +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] At present, there are two methods for sorting target nucleic acid fragments of different sizes, one is recovery by gel cutting, but the experimental method is cumbersome and time-consuming, and there is a certain risk in ultraviolet irradiation, and it is easy to cause mutations in nucleic acid bases
Another method is described in the patent US6534262 to use polyethylene glycol (PEG) and sodium chloride to separate and precipitate nucleic acids, and effectively sort out target nucleic acid fragments, but it takes a long time to process, the operation is complicated, and the nucleic acid content in the nucleic acid mixture When higher, there will be good recovery efficiency

Method used

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Examples

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Embodiment example 1

[0026] Implementation Case 1: Fragment Gradient Sorting on DNA

[0027] Use a nucleic acid mixture containing 100bp, 200bp, 300bp, 400bp, 500bp, 600bp, 700bp, 800bp, 900bp, 1kb, 1.2kb, 1.5kb, 2kb, 3kb for nucleic acid sorting templates to sort nucleic acid fragments of different segments.

[0028] The specific operation steps are as follows:

[0029] 1. Binding: Take seven 1.5ml EP tubes, add 50ul nucleic acid mixture respectively, and then select a specific volume of magnetic bead binding solution according to the size of the target fragment to be sorted (see Table 1), vortex and mix, and place at room temperature for 5 minutes. The EP tube was placed on the magnetic stand for 2 minutes, and the supernatant was discarded.

[0030] 2. Washing: Take 200ul of washing liquid and vortex to mix the magnetic beads, and place at room temperature for 30s. After the end, place the centrifuge tube on the magnetic stand for 2min, discard the supernatant, and dry at room temperature for ...

Embodiment example 2

[0039] Implementation Case 2: Fragment Gradient Sorting under DNA

[0040] Use a nucleic acid mixture containing 100bp, 200bp, 300bp, 400bp, 500bp, 600bp, 700bp, 800bp, 900bp, 1kb, 1.2kb, 1.5kb, 2kb, 3kb for nucleic acid sorting templates to sort nucleic acid fragments of different segments.

[0041] The specific operation steps are as follows:

[0042] 1. The first binding (remove the upper fragment): Take six 1.5ml EP tubes, add 50ul nucleic acid mixture respectively, and then select a specific volume of magnetic bead binding solution according to the size of the target fragment to be sorted (see Table 2), and vortex to mix , placed at room temperature for 5 minutes, and then placed the EP tube on the magnetic stand for 2 minutes, and transferred the supernatant to a new EP tube for later use.

[0043] 2. The second binding (binding to the lower fragment): select a specific volume of magnetic bead binding solution (see Table 2) according to the size of the target fragment, ...

Embodiment example 3

[0054] Implementation case 3: DNA intermediate fragment sorting

[0055] Use a nucleic acid mixture containing 100bp, 200bp, 300bp, 400bp, 500bp, 600bp, 700bp, 800bp, 900bp, 1kb, 1.2kb, 1.5kb, 2kb, 3kb for nucleic acid sorting templates to sort nucleic acid fragments of different segments.

[0056] The specific operation steps are as follows:

[0057] 1. The first binding (remove the upper fragment): Take seven 1.5ml EP tubes, add 50ul nucleic acid mixture respectively, and then select a specific volume of magnetic bead binding solution according to the size of the target fragment to be sorted (see Table 3), and vortex to mix , placed at room temperature for 5 minutes, and then placed the EP tube on the magnetic stand for 2 minutes, and transferred the supernatant to a new EP tube for later use.

[0058] 2. The second binding (binding to the middle fragment): select a specific volume of magnetic bead binding solution according to the size of the target fragment (see Table 3), a...

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Abstract

The invention discloses a nucleic acid fragment sorting and purifying reagent and method. The reagent comprises a magnetic bead binding solution, a washing solution and an eluting solution, and can beused for sorting and purifying targeted nucleic acid fragments of different segments in a mixture sample. Sorting of the targeted nucleic acid fragments comprises the following steps that a first nucleic acid mixture containing different segments and the magnetic bead binding solution are mixed uniformly, placed at the room temperature, and then placed on a magnetic stand for standing, supernatant is discarded, and washing and elution are carried out; the volume mixing ratio of the first nucleic acid mixture to the magnetic bead binding solution is 1:(1.2-0.45). In addition, whether or not secondary sorting is performed can be selected according to requirements, that is to say, the first nucleic acid mixture and magnetic beads are combined with the separated supernatant to be taken as a second nucleic acid mixture, and then binding separation, washing and elution are carried out again; the targeted nucleic acid fragments of different segments can be sorted by adjusting the volume of the added magnetic bead binding solution. The provided reagent and method can be used for downstream nucleic acid fragment analysis, second generation sequencing platform library construction and the like.

Description

technical field [0001] The invention belongs to the field of biology, and in particular relates to a reagent and method for sorting and purifying nucleic acid fragments. Background technique [0002] The British biochemist Sanger invented the hydrogen-oxygen-terminated DNA sequencing method, which greatly promoted the industry prospect of gene sequencing development, and then the second-generation sequencing technology and the third-generation sequencing technology gradually appeared, and these two technologies are generally referred to as next-generation sequencing. Technology (NGS), next-generation sequencing has a wide range of applications, as follows: 1. Denovo sequencing, resequencing and other DNA sequencing; 2. RNA sequencing; 3. Metagenome sequencing; 4. Epigenetics. The nucleic acid templates required by next-generation sequencing have certain requirements in terms of quality and quantity, and the fragment size of nucleic acid templates is of great significance for...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/10
CPCC12N15/1013C12Q2523/308
Inventor 尹华立裘惠良
Owner 杭州千基生物科技有限公司
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