Molecular protection and prescription design method for protein drug activity
A protein drug and prescription design technology, applied in the biological field, can solve the problems of expensive demand, narrow screening area, cumbersome steps, etc., and achieve the effects of fast research and development, high screening efficiency, high degree of programming and automation
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Embodiment 1
[0039] Embodiment 1. In the present invention, a comprehensive database of active protective agents is provided, including the specific molecular structure, precise charge distribution data, intramolecular mechanical parameters and physicochemical properties of active protective agents.
[0040] Among them, the detailed molecular structure of the active protective agent is based on the crystal structure of the corresponding active protective agent in the Cambridge Crystal Structure Database to construct the specific molecular structure of the active protective agent, including a clear three-dimensional molecular structure and its connection relationship, accurate cis-trans isomerism and optical isomerism characteristics; the solvation structure of the active protective agent was calculated at the calculation level of B3LYP / cc-pVTZ SCRF=(IEFPCM,Solvent=water) through the Gaussian quantum chemical calculation software package.
[0041] Among them, the accurate charge distribution...
Embodiment 2
[0044] Embodiment 2. In the present invention, a selective adsorption screening and determination method of an active protective agent on the surface of a protein drug is provided, comprising the following steps:
[0045] S1: Construct the selective adsorption protective layer of the active protective agent on the surface of the protein drug: partition the active protective agent on the surface of the protein drug according to the molecular size of the active protective agent, and put the active protective agent on the surface of the protein drug molecule through the Monte Carlo method without being protected by the active protective agent In the occupied area, find the potential adsorption site with the largest contact coefficient and the strongest interaction in this area through the rotation and translation of the active protective agent, and determine and record the adsorption conformation and adsorption site. When all the surface partitions of the protein drug are tried to...
Embodiment 3
[0058] Example 3, in the present invention, a method for designing a molecular protection prescription for protein drug activity includes the following steps:
[0059] S1: Solvation Correction:
[0060] ① Effect of solvation on the interaction of host and guest
[0061] In aqueous solution, due to the effect of solvation, the molecular protection types of active protective agents on specific protein drugs are divided into three types, including direct protection, indirect protection and double protection, such as figure 1 shown.
[0062] Effect type 1 is direct protective effect: the effect of the protective agent on the protein drug is large, and the effect on the water solvent is small, and the protective agent is more likely to be adsorbed on the protein. This type of action is similar to that of anhydrous solvents, but the presence of aqueous solvents weakens the effects of protective agents and protein drugs. In solution, direct protection is strong.
[0063] Action t...
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