Beta-lactamase SHV gene variation detecting chip and application thereof
A lactamase and detection chip technology, which is applied in the field of beta-lactamase SHV gene mutation detection chips, can solve the problems of wasting manpower and material resources, unable to judge whether pathogenic bacteria have drug resistance, time-consuming and the like
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Embodiment 1
[0064] Example 1 Reverse hybridization
[0065] 1. Preparation of gene chip
[0066] (1) Probe dissolution
[0067] Each probe was diluted with TE solution to a final concentration of 10 mM. Mix the probe with a concentration of 10mM and the PBS solution with a concentration of 200mM in a medium volume of a 384-well plate, seal the 384-well plate with an adhesive sheet, shake at room temperature for 2 minutes, centrifuge, and store at -20°C for sample application .
[0068] (2) Spotting
[0069] The pre-designed and synthesized probes are loaded onto the solid-phase carrier substrates made of glass slides, silicon wafers, etc. through contact spotting or inkjet spotting. The film base adopts Cell Associates CSS-100 aldehyde base film base, and the Ominigrid 100 model spotting instrument of GeneMachine Company is applied at a humidity of 65-75% (based on the FullMoon film base) and a temperature of 25°C. The format of spotting is 1×3, and each matrix is 8×18. After the s...
Embodiment 2
[0078] Example 2 forward hybridization
[0079] 1. Full-length SHV gene amplification and chip preparation
[0080] Primers SHV-F (5'-CTCAAGGATGTATTGTGGTTATGCGT-3', SEQ ID NO: 181) and SHV-R (5'-GGGTTAGCGTTGCCAGTGCTCGAT-3', SEQ ID NO: 182) were used to amplify the full-length SHV gene. PCR amplification was carried out with 100μl reaction system, the reaction system was 0.3mM dNTP, 10mM Tris-HCl, 50mM KCl, 2mM MgCl 2 , 20% Q solution (Qiagen), 0.01 μM SHV-F, 0.2 μM SHV-R, 100 ng genomic DNA, 3U Ex Taq enzyme (Takara). Cycle parameters: denaturation at 94°C for 5 min; denaturation at 94°C for 40 s, annealing at 65°C for 1 min, extension at 72°C for 1 min, a total of 40 cycles; finally extension at 72°C for 5 min. PCR products were purified with QIAquick PCR Purification Kit (Qiagen, Cat. No. 28106). The concentration of the purified PCR product was adjusted to 400 ng / μl mM.
[0081] Mix the probe with a concentration of 400ng / μl and 100% DMSO in a medium volume of a 384-wel...
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