Primer set, kit and method for identifying the type of Desmodium spp.
A technique for identifying the type of Desmodium spp., a kit for identifying the type of Desmodium spp., and a primer set for identifying the type of D. Versatility, high accuracy, and high stability
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Embodiment 1
[0059] Materials, Instruments and Reagents
[0060] 1. Sample collection of Desmodium spp.
[0061] The 15 samples used for the experiment were collected in Guangxi and Guangdong provinces in July and August 2014. The collected fresh leaves were wrapped with filter paper locally and stored in ziplock bags with color-changing silica gel at room temperature. for a week. See Table 1 for information on the source information of 15 copies of S. glabras.
[0062] Table 1 Sources of Desmodium spp.
[0063] Sample serial number
place of origin
Cultivated / wild
A
Kuangling Village, Zhongyong Township, Lingui District, Guilin City
cultivation
B
Sanpo Village, Siding Town, Rong'an County, Liuzhou City
cultivation
C
Dumei Village, Xindi Town, Cangwu County, Wuzhou City
half wild
D
Jilin Village, Qiaogong Township, Xingbin District, Laibin City
half wild
E
Dongling Village, Wutong Town, Lingui County,...
Embodiment 2
[0068] Solution configuration
[0069] 1. 50×TAE solution
[0070] Accurately weigh 242g of Tris base, 57.1ml of glacial acetic acid, and 100ml of 0.5mol / L EDTA, adjust the pH to 8.0 with NaOH, and dilute to 1L with water, and set aside.
[0071] Electrophoresis buffer: Dilute 50×TAE solution 50 times with pure water to obtain 1×TAE working solution.
[0072] 2. DNA extraction buffer
[0073]2% (W / V) CTAB, 3% (W / V) PVP, 1mol / L Tris-Hcl (pH=8.0) 50mL, 0.5mol / L EDTA-Na 2 (pH=8.0) 20mL, NaCl 41g, water to 500ml. After sterilization, add 1000 μL of β-mercaptoethanol.
[0074] 3. Nucleic acid dye working solution
[0075] After diluting Sybra Green I 100 times with 1×TAE working solution, add 2 times the volume of 6×loadingbuffer, and mix well to obtain the working solution of nucleic acid dye.
Embodiment 3
[0077] Extraction of Genomic DNA from Desmodium spp.
[0078] The collected fresh Desmodium broadleaf leaves were absorbed and dried by color-changing silica gel, and then the surface of the leaves was washed with absolute ethanol. After the absolute ethanol was evaporated, they were cut into fine pieces with scissors. After adding liquid nitrogen, they were quickly ground into powder with a ball mill.
[0079] Quickly add the ground leaf powder (about 30 mg) to 800 μL of DNA extraction buffer (pre-added RNase 50 μg) preheated to 65 °C in a water bath at 65 °C for 25 minutes, and turn the EP tube upside down several times every 5 minutes to prevent the leaf powder from agglomerating. Piece. Take out the EP tube, put it on ice, add an equal volume of Tris-saturated phenol: chloroform: isoamyl alcohol (25:24:1), shake well, put it in a centrifuge, centrifuge at 10000rpm at 20°C for 10min, take 600μL Serum. Add an equal volume of chloroform:isoamyl alcohol (24:1) to the superna...
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