Kit and use thereof
A kit and probe technology, applied in the field of biomedicine, can solve problems such as low sensitivity, large limitations, and inability to detect unknown mutations, and achieve the effects of high quality, elimination of errors, and improved accuracy
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Embodiment 1
[0057] Obtaining the kit of one aspect of the present invention, and realizing the method and / or device of one aspect of the present invention generally include the design of target region capture probes / chips, micro-sample library building, hybridization on-machine sequencing, and biological information analysis of off-machine data and interpretation of variable data.
[0058] (1) Determination, sequence design and production of the genes selected for the chip.
[0059] First, the top 20 genes with the mutation rate in the gastric cancer classification in the COSMIC database were investigated, and the genes related to gastric cancer medication, important oncogenes and tumor suppressor genes found in gastric cancer were screened out, and the middle and high frequency mutations of gastric cancer were added. Genes to obtain the final gene list of the chip, a total of 17, as shown in Table 1.
[0060] The target area of the chip is calculated by a program independently written...
Embodiment 2
[0096] 1. Sample selection and DNA extraction.
[0097] In the embodiment of the present invention, a formalin-fixed paraffin-embedded (FFPE) gastric cancer tissue sample with a known mutation TP53 gene I195F mutation was selected, and the specific sample information is shown in Table 3.
[0098] table 3
[0099] sample number organization type source mutation site access to SC1 FFPE Patients with poorly differentiated gastric adenocarcinoma TP53-I195F clinical sample
[0100]The I195F mutation of the TP53 gene carried by the SC1 sample was verified by Sanger sequencing. Figure 4 .
[0101] Genomic DNA was extracted using DneasyBlood & Tissue Kit Genome Extraction Kit (Qiagen, catalog number: 69504). The concentration of the extracted DNA was detected by a Qubit 2.0 fluorescence spectrophotometer (Life technologies, product number: Q32866).
[0102] 2. Genomic DNA Fragmentation
[0103] The sample fragmentation uses the Covaris system o...
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