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Phenoxy acryloyl phosphoramidite, preparation method and application thereof

An alkoxy and alkyl technology, applied in the field of phenoxy acryloyl phosphite amides, can solve the problems of weak hydrophobicity, low synthesis yield, single category and the like

Active Publication Date: 2022-04-05
杭州韶法医药技术有限公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Since the 1-position hydroxyl group and the 3-position hydroxyl group are both symmetrical primary hydroxyl groups, it is easy to generate double-substituted by-products, resulting in low synthesis efficiency
In addition, the acrylic group separated from the DNA by the aliphatic chain of the flexible structure has weak hydrophobicity and insufficient rigidity, which may not be conducive to the polymerization reaction
The synthesis yield of existing acryloyl phosphoramidites is low, and the link between the corresponding acryl group and DNA is an aliphatic chain, and the category is single

Method used

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  • Phenoxy acryloyl phosphoramidite, preparation method and application thereof
  • Phenoxy acryloyl phosphoramidite, preparation method and application thereof
  • Phenoxy acryloyl phosphoramidite, preparation method and application thereof

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0058] Synthesis of Intermediate 1:

[0059]

[0060] Method A: At 0°C, add methacryloyl chloride (11.4g, 110mmol) dropwise to a round-bottomed flask containing a solution of 4-(2-aminoethyl)phenol (13.7g, 100mmol) in pyridine (100mL), Raised to room temperature for 2 hours. Saturated sodium bicarbonate solution was added to terminate the reaction, pyridine was distilled off under reduced pressure, and the obtained residue was subjected to column chromatography to obtain compound 1 (16.8 g, 82%) as a pale yellow solid.

[0061] Method B: Methacrylic acid (0.86 g, 10 mmol), 1-ethyl-(3-dimethylaminopropyl) carbodiimide hydrochloride (EDC.HCL, 1.91 g, 10 mmol), N- Hydroxysuccinimide (NHS, 1.15 g, 10 mmol), 4-(2-aminoethyl)phenol, (1.37 g, 10 mmol) in dichloromethane (30 mL) was reacted at room temperature for 12 hours. The reaction solution was washed with aqueous sodium bicarbonate solution and saturated brine, the organic phase was dried over sodium sulfate, and the solven...

Embodiment 2

[0064] Synthesis of Intermediate 2:

[0065]

[0066] Method A: Add methacryloyl chloride (1.2 g, 11 mmol) dropwise to a round bottom flask containing a solution of 2-(4-iodophenyl)ethylamine (2.47 g, 10 mmol) in pyridine (10 mL) at 0°C , rise to room temperature and react for 5 hours. Saturated sodium bicarbonate solution was added to terminate the reaction, pyridine was distilled off under reduced pressure, and the obtained residue was subjected to column chromatography to obtain compound 2 (2.8 g, 89%) as a pale yellow solid.

[0067] 1 H NMR (400MHz, DMSO) δ9.20(s, 1H), 8.02(t, J=5.3Hz, 1H), 7.61(d, J=8.3Hz, 2H), 7.02(d, J=8.3Hz, 2H ), 5.63(s, 1H), 5.31(s, 1H), 3.24(dd, J=14.4, 6.3Hz, 2H), 2.66(t, J=7.2Hz, 2H), 1.83(s, 3H); 13 C NMR (101 MHz, DMSO) δ 167.09, 155.13, 137.41, 130.95, 130.13, 121.12, 115.32, 43.21, 36.32, 16.03. MS (ESI+): m / e = 316 (M+1).

Embodiment 3

[0069] Synthesis of Intermediate 3:

[0070]

[0071] Glycidol (6.5 g, 88 mmol), N-(4-hydroxyphenethyl)methacrylamide (16.4 g, 80 mmol) and triethylamine (8 mL) in ethanol (80 mL) were refluxed for 10 hours. The solvent was distilled off under reduced pressure, and the obtained residue was subjected to column chromatography to obtain compound 2 (17.6 g, 79%) as a white solid.

[0072] 1 H NMR (400MHz, DMSO) δ7.99(s, 1H), 7.10(d, J=8.4Hz, 2H), 6.85(d, J=8.4Hz, 2H), 5.61(s, 1H), 5.30(s , 1H), 4.95(d, J=4.7Hz, 1H), 4.68(t, J=5.6Hz, 1H), 3.95(dd, J=9.3, 3.7Hz, 1H), 3.83-3.75(m, 2H) , 3.43(t, J=5.4Hz, 2H), 3.27(dd, J=13.9, 6.7Hz, 2H), 2.68(t, J=7.4Hz, 2H), 1.83(s, 3H); 13 C NMR (101MHz, DMSO) δ 167.32, 157.11, 140.00, 131.27, 129.52, 118.80, 114.24, 69.91, 69.4562.68, 40.76, 34.16, 18.63. MS(ESI+): m / e=280(M+1) .

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Abstract

The invention provides a phenoxy acryloyl phosphoramidite, a preparation method and an application thereof. Specifically, the present invention provides a reagent that can be used as solid-phase synthesis, and the compound has the structure of formula I, wherein, R 1 , R 2 , R 3 , R 4 , R 5 , m is defined as defined in the specification. Through this compound, propenyl groups can be introduced into the nucleic acid and further polymerized. The invention also discloses the preparation method and application of the compound of formula I.

Description

technical field [0001] The invention relates to a phenoxy acryloyl phosphoramidite, a preparation method and its application, in particular to a phenoxy acryloyl phosphoramidite which can be used for structural modification of nucleic acids, a preparation method and its application. Background technique [0002] Biomacromolecular nucleic acids have specific recognition and self-assembly functions. Solid-phase synthesis technology enables short-chain oligonucleotides to be synthesized automatically and efficiently by DNA synthesizers. At present, oligonucleotides have been widely used in the fields of biology, medicine and nanotechnology. Small interfering nucleic acid (Small interfering RNA, siRNA) can silence disease-causing genes (Elbashir S, Tuschl T, et.al., Duplexes of 21-nucleotide RNAs mediate RNAinterference in cultured mammalian cells.Nature, 2001, 411, 494- 988; Hamilton A, Baulcombe D, A species of small antisense RNA in posttranscriptional genesilencing in plant...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C07F9/24C07H21/00C08F220/60C08F220/56
CPCC07F9/2408C07F9/2458C07H21/00C08F220/60C08F220/606C08F220/56
Inventor 王若文陈宇
Owner 杭州韶法医药技术有限公司