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Methanol dehydrogenase fusion proteins

A methanol dehydrogenase and fusion protein technology, applied in the direction of fusion polypeptide, enzyme, lyase, etc., can solve problems such as increased concentration, adverse effects on cells, and adverse effects on cell health

Active Publication Date: 2018-11-09
GENOMATICA INC
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

In other cases, accumulation of metabolic intermediates may have direct adverse effects on cells
For example, elevated concentrations of small molecules such as methylglyoxal or formaldehyde can non-specifically modify intracellular proteins and adversely affect cellular health

Method used

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  • Methanol dehydrogenase fusion proteins
  • Methanol dehydrogenase fusion proteins
  • Methanol dehydrogenase fusion proteins

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Experimental program
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Effect test

Embodiment 1

[0239] Embodiment 1: Preparation of MeDH fusion protein construct

[0240] Nucleic acid constructs were prepared for expression of various MeDH-containing fusion proteins, as well as no-fusion control constructs and no-insertion controls. Table 7 is a list of nucleic acid constructs and Table 8 provides details of the genes used in the fusion protein constructs.

[0241] Table 7

[0242] pZS13S-p100-2315LS-linker-hps-phi

pZS13S-p100-2435A-linker-hps-phi

pZS13S-p100-2451A-linker-hps-phi

pZS13S-p108-2315LS-linker-hps-phi

pZS13S-p108-2435A-linker-hps-phi

pZS13S-p108-2451A-linker-hps-phi

pZS13S-p100-2435A-hps-phi

pZS13S-p100-2451A-hps-phi

pZS13S-p108-2315LS-hps-phi

pZS13S-p108-2435A-hps-phi

pZS13S-p108-2451A-hps-phi

[0243] Table 8

[0244]

Embodiment 2

[0246] Example 2: Preparation and Analysis of Engineering Escherichia coli Expressing MeDH Fusion Protein

[0247] The nucleic acid constructs listed in Table 7 were transformed into E. coli. E. coli transformants expressing the MeDH-2616A fusion were evaluated for soluble protein expression, methanol dehydrogenase activity in E. coli cell lysates, and the ability to confer growth on methanol as a carbon source to an engineered E. coli strain (ECKh-8665) Ability. Several variables were tested to identify combinations that conferred improved activity, including: promoter strength, different MeDH variants, and the peptide linker in the MeDH and 2616 fusion.

[0248] The nucleic acid constructs were transformed into E. coli strain 7539 and grown overnight at 37°C in 5 mL of LB+carb100 broth.

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Abstract

Described herein are fusion proteins including methanol dehydrogenase (MeDH) and at least one other polypeptide such as 3-hexulose-6-phosphate dehydrogenase (HPS) or 6-phospho-3-hexuloisomerase (PHI),such as DHAS synthase or fructose-6-Phosphate aldolase or such as DHA synthase or DHA kinase. In a localized manner, the fusion protein can promote the conversion of methanol to formaldehyde and thento a ketose phosphate such as hexulose 6-phosphate or then to DHA and G3P. When expressed in cells, the fusion proteins can promote methanol uptake and rapid conversion to the ketose phosphate or tothe DHA and D3P, which in turn can be used in a pathway for the production of a desired bioproduct. Beneficially, the rapid conversion to the ketose phosphate or to the DHA and G3P can avoid the undesirable accumulation of formaldehyde in the cell. Also described are engineered cells expressing the fusion protein, optionally include one or more additional metabolic pathway transgene(s), methanol metabolic pathway genes, target product pathway genes, cell culture compositions including the cells, methods for promoting production of the target product or intermediate thereof from the cells, compositions including the target product or intermediate, and products made from the target product or intermediate.

Description

[0001] priority claim [0002] This application claims priority to US Provisional Patent Application 62 / 249,032, filed October 30, 2015, and US Provisional Patent Application 62 / 260,189, filed November 25, 2015, the entire contents of which are incorporated herein by reference. At the same time, the entire content of the 28kb ASCII text application titled "GNO0027WO_Sequence_Listing.txt" created on October 26, 2016 is also incorporated into this application by reference. technical field [0003] This application relates to fusion proteins containing methanol dehydrogenase and engineered cells expressing these fusions and methods of using methanol to produce biological products. Background technique [0004] In intracellular metabolic pathways, metabolic intermediates are precursor molecules to pathway products, which are often biologically important molecules. [0005] Various factors can affect the processing of metabolic intermediates in product pathways. Intermediates ...

Claims

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Application Information

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IPC IPC(8): C07K14/195C12N15/62C12N5/00
CPCC12N9/0006C12N9/0004C12N15/70C12Y101/01244C12P7/02C07K2319/00C12R2001/19C12N9/88C12N9/90C12N15/52C12Y401/02043C12Y503/01027C12N9/1029C12Y101/02007C12Y203/01085C12Y401/02013C12P7/24
Inventor 纳尔逊·R·巴顿李静怡约瑟夫·R·华纳普里蒂·法克雅
Owner GENOMATICA INC
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