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Prevention and treatment of neurodegenerative diseases through autophagy activity mediated by ligand or arginylated bip binding to p62 zz domain
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一种神经变性病、结构域的技术,应用在神经变性病领域
Active Publication Date: 2018-11-23
奧土择破利悟
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No previous studies have proposed p62 as a drug target for autophagy activation or removal of protein aggregates in degenerative brain diseases
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Embodiment 1
[0105] Example 1: Identification of p62 as a novel N-recognizer
[0106] To identify novel N-recognizers that bind N-degrons, peptides were synthesized by linking N-degrons to the N-terminus. Then, protein species that could bind the synthesized peptides in rat tissue extracts were investigated.
[0107] In particular, X-peptide pull-down analysis and mass spectrometry-related iTRAQ (isotope-labeled relative and absolute quantification) were performed. As the N-terminal rule interacting protein, rat testis extract was used, and also biotinylated X peptide (R11 sequence: RIFSTIEGRTY (type 1) ), F11 sequence (FIFSTIEGRTY ( type 2), and V11 (stable control) (VIFSTIEGRTY) ( Figure 5a and d). The 10-mer linker linked to the X peptide was derived from the Sindbis virus polymerase nsP4, an N-terminal regular substrate. The mixture was diluted with 5X PBS and incubated overnight at 4°C. Proteins pulled down by using each X-peptide were labeled by iTRAQ using different fluoresc...
Embodiment 2
[0110] Example 2: Identification of p62 as an N-recognizer capable of binding Nt-Arg, Nt-Phe, Nt-Trp, and Nt-Tyr
[0111] In order to more clearly identify the p62 protein in Example , the following experiment was performed.
[0112] Specifically, Western blotting was performed by using a mouse monoclonal p62 antibody (1:500, ab56416, Abcam, Cambridge, UK) raised from the full-length recombinant protein corresponding to amino acids 1-440 of human p62. As a result, such as Figure 5d As shown, in vitro transcribed and translated p62 showed strong binding affinity specifically to R11 peptide, but weak binding affinity to F11 peptide, and no significant binding to V11 peptide ( Figure 5d ). Based on the concentrations used for the experiments herein, the R11 peptide could precipitate p62 with at least 40% efficiency, while the F11 peptide showed 5% efficiency. Results were verified by dipeptide competition assays. The RA peptide (Arg-Ala) competed most efficiently with the...
Embodiment 3
[0115] Example 3: Evaluation of the Binding Ability of p62 to Nt-Arg and Nt-Phe
[0116] The following experiments were performed to determine the binding constants of p62 to Nt-Arg and Nt-Phe.
[0117] Specifically, p62-D3-GST was expressed in Escherichia coli (E. coli) and then purified with 50% purity. Biotin-labeled X-peptide was immobilized on a streptavidin-coated chip using a surface plasmon resonance biosensor (Biacore), and p62-D3-GST protein was inserted into the immobilized peptide.
[0118] As a result, such as Image 6 As shown, p62-D3-GST binds strongly to R11 peptide, weakly to F11, and does not bind to V11 ( Image 6 ). The Kd values of R11 and F11 are 44 nM and 3.4 μM, respectively. In particular, p62 binds about 50 times more strongly to Nt-Arg than to the UBR box-containing N-recognizer (Kd, 3.2 μΜ). The results suggest that p62 is a novel drug target.
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Abstract
The drug action mechanisms and core techniques of the present invention are summarized in figure 1. Specifically, the invention provides malignant denatured proteins, such as mutant Huntingtin proteinor alpha-synuclein, stick together to grow into oligomer aggregates (1, 2), fibrillar aggregates (3), and ultimately inclusion bodies (4). Young neuronal cells produce a large quantity of Nt-Arg through N-terminal arginylation (5) of endoplasmic reticulum chaperones, such as BiP, and thereafter, arginylated BiP (R-BiP) comes into the cytoplasm and binds with denatured proteins (6). Nt-Arg of R-BiP, as a ligand, binds with the ZZ domain of p62 (7) to induce the structural activation of p62 (8) while the ordinarily closed inactive form of p62 is changed with an open form thereof, and thus PB1 and LC3-binding domains are exposed. On the basis of oligomerization (9) by the PB1 domain, p62 binds with the denatured protein aggregates to be concentrated to autophagically degradable aggregates, that is, p62 bodies (10). Thereafter, p62 completes autophagy targeting (11) and lysosomal proteolysis through binding with LC3 protruding on the autophagosomal membranes. In young neuronal cells, theautophagic proteolysis occurring through steps 5-11 is strong, and thus the cytotoxic protein aggregates (1-5) do not accumulate, but in aged neuronal cells, the autophagic proteolysis occurring through steps 5-11 is weakened, and thus the protein aggregates (1-5) accumulate, resulting in a vicious cycle. The present invention attempts to effectively remove Huntingtin and alpha-synuclein protein aggregates and the like by artificially activating p62 using low-mass ligands of the p62 ZZ domain (12, 13). Specifically, p62 binding the ligands through step 12 promotes p62-R-BiP-denatured protein oligomerization (9) and autophagy aggregate formation (10). In addition, the ligand-62 conjugates step 13 act as autophagy activators (14), to promote LC3 synthesis, the conversion of LC3-I into LC3-II, and the like, thereby promoting the formation of autophagosomes (15).
Description
technical field [0001] The present invention relates to therapeutic methods for neurodegenerative diseases by modulating autophagy activity mediated by synthetic ligands binding to the P62ZZ domain or arginylated BIP (arginylated BIP, R-BiP). Background technique [0002] The N-end rule (N-end rule) pathway is a proteolytic system in which the single N-terminal residue of a protein is used as a degradation signal ( figure 1 with 2 ). N-terminal regular degradation signals are exemplified by: Type I basic residues, including Arg, Lys, and His; and Type II hydrophobic residues, including Phe, Leu, Trp, Tyr, and Ile ( figure 2 ). These N-terminal residues bind specific N-recognizers (N-recognin) (Figure 3). The inventors have discovered or cloned previously known N-recognizers, namely UBR1, UBR2, UBR4, and UBR5, for the first time, and found that they utilize a UBR box (UBR box) as a substrate recognition domain (Tasaki et al. 2005, Fig. 3). The present inventors also de...
Claims
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