Prevention and treatment of neurodegenerative diseases through autophagy activity mediated by ligand or arginylated bip binding to p62 zz domain
一种神经变性病、结构域的技术,应用在神经变性病领域
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Embodiment 1
[0105] Example 1: Identification of p62 as a novel N-recognizer
[0106] To identify novel N-recognizers that bind N-degrons, peptides were synthesized by linking N-degrons to the N-terminus. Then, protein species that could bind the synthesized peptides in rat tissue extracts were investigated.
[0107] In particular, X-peptide pull-down analysis and mass spectrometry-related iTRAQ (isotope-labeled relative and absolute quantification) were performed. As the N-terminal rule interacting protein, rat testis extract was used, and also biotinylated X peptide (R11 sequence: RIFSTIEGRTY (type 1) ), F11 sequence (FIFSTIEGRTY ( type 2), and V11 (stable control) (VIFSTIEGRTY) ( Figure 5a and d). The 10-mer linker linked to the X peptide was derived from the Sindbis virus polymerase nsP4, an N-terminal regular substrate. The mixture was diluted with 5X PBS and incubated overnight at 4°C. Proteins pulled down by using each X-peptide were labeled by iTRAQ using different fluoresc...
Embodiment 2
[0110] Example 2: Identification of p62 as an N-recognizer capable of binding Nt-Arg, Nt-Phe, Nt-Trp, and Nt-Tyr
[0111] In order to more clearly identify the p62 protein in Example , the following experiment was performed.
[0112] Specifically, Western blotting was performed by using a mouse monoclonal p62 antibody (1:500, ab56416, Abcam, Cambridge, UK) raised from the full-length recombinant protein corresponding to amino acids 1-440 of human p62. As a result, such as Figure 5d As shown, in vitro transcribed and translated p62 showed strong binding affinity specifically to R11 peptide, but weak binding affinity to F11 peptide, and no significant binding to V11 peptide ( Figure 5d ). Based on the concentrations used for the experiments herein, the R11 peptide could precipitate p62 with at least 40% efficiency, while the F11 peptide showed 5% efficiency. Results were verified by dipeptide competition assays. The RA peptide (Arg-Ala) competed most efficiently with the...
Embodiment 3
[0115] Example 3: Evaluation of the Binding Ability of p62 to Nt-Arg and Nt-Phe
[0116] The following experiments were performed to determine the binding constants of p62 to Nt-Arg and Nt-Phe.
[0117] Specifically, p62-D3-GST was expressed in Escherichia coli (E. coli) and then purified with 50% purity. Biotin-labeled X-peptide was immobilized on a streptavidin-coated chip using a surface plasmon resonance biosensor (Biacore), and p62-D3-GST protein was inserted into the immobilized peptide.
[0118] As a result, such as Image 6 As shown, p62-D3-GST binds strongly to R11 peptide, weakly to F11, and does not bind to V11 ( Image 6 ). The Kd values of R11 and F11 are 44 nM and 3.4 μM, respectively. In particular, p62 binds about 50 times more strongly to Nt-Arg than to the UBR box-containing N-recognizer (Kd, 3.2 μΜ). The results suggest that p62 is a novel drug target.
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