Cinnamic acid-4-hydroxylase gene thc4h and its application
A technology of hydroxylase and cinnamic acid, applied in the field of genetic engineering, can solve the problems of relatively little research at the molecular level
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Embodiment 1 3
[0025] Example 1 Acquisition of the full-length sequence of the ThC4H gene cDNA of cloverleaf
[0026] The leaves of the fresh plants of cloverleaf were taken, wrapped in tin foil, and quickly frozen with liquid nitrogen, and total RNA was extracted and reverse transcribed into cDNA. Total RNA was extracted according to the instructions of TIANGEN RNAprep Pure Plant Total RNA Extraction Kit (DP441), and its integrity and concentration were detected by 1.0% agarose gel electrophoresis and nucleic acid concentration detector.
[0027] Reverse transcription of total RNA according to Takara PrimeScript TM II 1st Strand cDNA Synthesis Kit instructions.
[0028] Based on the existing transcriptome data and the C4H gene sequence of the same family and genus in NCBI, BLAST analysis was performed, and the sequence with the highest similarity was selected as the target gene sequence, and multiple pairs of primers were designed based on the open reading frame sequence of this sequence....
Embodiment 2
[0034] Embodiment 2 The secondary structure and tertiary structure prediction of ThC4H and phylogenetic tree analysis
[0035] Using the online software SOPMA (https: / / npsa-prabi.ibcp.fr / cgi-bin / npsa_automat.pl?page=npsa_sopma.html) to predict the secondary structure of ThC4H protein in the biosynthetic pathway of resveratrol, the results like figure 2 As shown, the protein consists of 47.92% Alpha helix, 12.87% Extended strand, 4.55% Beta turn and 34.65% Random coil, The α-helical structure is the backbone of the secondary structure of protein C4H.
[0036]The online software SWISS-MODEL (http: / / swissmodel.expasy.org / ) was used to predict the three-dimensional structure of ThC4H protein in the biosynthetic pathway of resveratrol. The method was X-ray, and the resolution was The result is as image 3 shown. The template number used is 6vby.1.A, the sequence identity (Seq Identity) is 75.25%, the state of the oligonucleotide (Oligo-state) is Monomer (monomer), and the seq...
Embodiment 3
[0043] Example 3 Functional verification of ThC4H gene
[0044] The cDNA sequence of ThC4H gene and the distribution of restriction sites on the plasmid vector pCMBIA1301 sequence were analyzed, and PCR primers with SmaI and XbaI restriction sites (upstream primer: TCCCCCGGGATGGATCTCATACTCATCG; downstream primer: GCTCTAGATCAAGCTTCTATTGCTTTG) were designed for the construction of overexpression vector.
[0045] The cloverleaf cDNA was used as a template for PCR amplification. The reaction system was the same as above. After the amplification product was subjected to 1.0% agarose gel electrophoresis, the DNA fragment consistent with the target gene was purified and recovered by a kit. The purified and recovered product was double digested with plasmid pCMBIA1301 at 37°C, and then purified and recovered by agarose gel electrophoresis. The purified and recovered digested products were ligated with T4 DNA ligase and incubated at 16°C overnight. The ligation system was: 2 μL plasmi...
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