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A method for fluorescence detection of Staphylococcus aureus based on chimera sequence design and molecular beacons

A Staphylococcus, molecular beacon technology, applied in the direction of microbial-based methods, biochemical equipment and methods, microbial measurement/testing, etc., can solve the problems of incomplete extension, sequence replication pressure, genome instability, etc., and achieve the expansion of the detection range , Improve the detection sensitivity, the effect of strong specificity

Active Publication Date: 2022-03-15
JIANGNAN UNIV
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  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] Chimeric sequences are initially artificial sequences generated unintentionally during the polymerase chain reaction. During the replicative elongation of DNA polymerase, due to incomplete elongation, the emergence of chimeric sequences is characterized by chimeric sequences derived from two (or possibly more Multiple) different template strands, leading to sequence replication stress and genome instability

Method used

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  • A method for fluorescence detection of Staphylococcus aureus based on chimera sequence design and molecular beacons
  • A method for fluorescence detection of Staphylococcus aureus based on chimera sequence design and molecular beacons
  • A method for fluorescence detection of Staphylococcus aureus based on chimera sequence design and molecular beacons

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Experimental program
Comparison scheme
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Embodiment 1

[0028] Example 1 The drawing of Staphylococcus aureus concentration standard curve

[0029] The sample containing Staphylococcus aureus was heated at 3000r·min -1 After centrifugation for 5 min, the pellet was washed 3 times with PBS buffer and resuspended in PBS buffer. 0.5μmol·L -1 The chimera sequence was denatured at 95°C for 5 minutes, then slowly cooled to 37°C and incubated for 45 minutes, mixed with 100 μL of PBS buffer containing different concentrations of Staphylococcus aureus, and placed in a shaker at 37°C, 220r min -1 Incubate for 45min. Take 10 μL of the above mixture, add 10 μL of molecular beacons and 5 μL of PBS buffer, and incubate in a 37° C. water bath for 100 min. Take 3 μL of the solution after incubation and add 30 μL restriction enzyme system, containing 6U Nb.bpu10I nicking endonuclease, 4.5U Bsm DNA polymerase and 250 μmol L -1 Free deoxyribonucleoside triphosphate, 10mmol L -1 Tris-HCl, 10mmol·L -1 MgCl 2 , 100mmol·L -1 KCl, 0.1 mg·mL -1...

Embodiment 2

[0031] The determination of Staphylococcus aureus content in the actual water sample of embodiment 2

[0032] In order to further verify the accuracy of this method in determining the content of Staphylococcus aureus in actual samples, Taihu Lake water and tap water without pretreatment were selected.

[0033] The cultured Staphylococcus aureus was heated at 3000r·min -1 Centrifuge for 5 min, and wash 3 times with PBS buffer to remove the medium. Then the precipitate was 8×10 2 CFU mL -1 and 8×10 4 CFU mL -1 The concentration was dissolved in 100 μL water sample. 0.5μmol·L -1 The chimera was denatured at 95°C for 5 minutes, then slowly cooled to 37°C and incubated for 45 minutes, mixed with 100 μL of PBS buffer containing different concentrations of Staphylococcus aureus, and placed in a shaker at 37°C, 220r min -1 Incubate for 45min. Take 10 μL of the above mixture, add 10 μL of molecular beacons and 5 μL of PBS buffer, and incubate in a 37° C. water bath for 100 mi...

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Abstract

The invention discloses a method for fluorescence detection of Staphylococcus aureus based on chimera sequence design and molecular beacon, which belongs to the fields of analytical chemistry, food safety and fermentation analysis, and environmental pollution detection. The present invention first designs a chimera sequence that exists in a hairpin structure and contains an aptamer of Staphylococcus aureus, and when there is Staphylococcus aureus, the chimera combines with it to open the hairpin structure; Nb.bpu10I is cut inside Dicer and Bsm DNA polymerase are added to the reaction system, and Bsm DNA polymerase synthesizes a fully complementary double strand through a strong strand displacement reaction; the golden yellow in the sample can be calculated using the linear relationship between the fluorescence signal and the number of Staphylococcus aureus Staphylococcus content. The invention amplifies the fluorescent signal, expands the detection range of the sensor, and improves the detection sensitivity. Compared with the traditional method for detecting Staphylococcus aureus, the method has strong specificity and high sensitivity.

Description

technical field [0001] The invention relates to a method for fluorescence detection of Staphylococcus aureus based on chimera sequence design and molecular beacons, which can perform highly sensitive determination of the content of Staphylococcus aureus in the environment, and belongs to analytical chemistry, food safety and fermentation analysis and environmental pollution detection field. Background technique [0002] Staphylococcus aureus is considered one of the most significant threats to public health, causing various infections including food poisoning, acute pneumonia, osteomyelitis, sepsis, scalded skin syndrome, etc. In addition, due to its multiple resistance and virulence, it increases the risk of infection for people, so the detection of Staphylococcus aureus has become the focus of attention in various countries. Standard methods for the detection of Staphylococcus aureus, such as the national standard detection method for Staphylococcus aureus (GB4789.10-2010...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12Q1/689C12Q1/6844C12Q1/14C12R1/445
CPCC12Q1/6844C12Q1/689C12Q2531/119C12Q2563/107
Inventor 周楠迪蔡蓉凤尹凡田亚平
Owner JIANGNAN UNIV