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Application of whole blood cell counting in prediction of SARS-CoV-2 infection

A blood cell counting and sars-cov-2 technology, applied in the biological field, can solve problems such as unpublished data reports

Active Publication Date: 2021-03-19
YANTAI ZHIYI MEDICINE TECH CO LTD +1
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] To predict whether a person is positive or negative for SARS-CoV-2 early in their disease, using machine learning to predict SARS-CoV-2 (positive / negative) test results from complete blood counts has not yet been published

Method used

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  • Application of whole blood cell counting in prediction of SARS-CoV-2 infection
  • Application of whole blood cell counting in prediction of SARS-CoV-2 infection
  • Application of whole blood cell counting in prediction of SARS-CoV-2 infection

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0031]Example 1, Patient Data Set Collection

[0032]The data sets include anonymous data for patients during hospitalization in Sao Paulo Hospital, Brazil, which have been studied by SARS-COV-2RT-PCR and other laboratory studies. All data is collected in accordance with the best international practice and anonymous. In order to have the difference between zero and the unit standard, all clinical details were standardized.

[0033]The data set includes RTPCR SARS-COV-2 test results and normal total blood cell count: blood cell accompanying, hemoglobin, red blood cell (RBC), lymphocyte, average platelet volume (MPV), white blood cells, basophils, neutrophils , Mean red blood cell hemoglobin (MCH), eosinophil, platelet, melocyte volume (MCV), monocytes, red blood cell distribution width (RBCDW) and flat erytocyte hemoglobin concentration (MCHC). 5,644 individual patients inspected between March 28, 2020, January 3, 2020, included the released integrated data set, 597 whole blood cell count ...

Embodiment 2

[0034]Example 2, Model definition classification

[0035]For our SARS-COV-2 positive and negative classification, we use machine learning models to compare, machine learning models, Decision Tree, K N-neighbor Algorithm (KNN), Support Vector Machine (SVM) and Simple Bayes (Bayes) Classified. Decision tree is an automatic learning technology for resolving classification and regression tasks. It extracts rules from a set of objects, which are represented by various attributes in the class; KNN is the easiest way to instance-based supervision classification One of the learning algorithms, classify the consistency between the recent K neighbors of unknown objects; the SVM classifier depends on the dimension of Vapnik-Chervonenkis (VC), and follows soft boundary assumptions; Springs, simple Bayesian classifiers are particularly suitable for high-dimensional data sets, taking into account its obvious simplicity, the method can be more complex classification system.

[0036]The performance of ea...

Embodiment 3

[0044]Example 3, k (double cross-validation

[0045]K / fold cross-validation is performed, which is a re-sample program for evaluating a machine learning model on a limited data sample. The process has a single parameter called K, which indicates the number of groups that split a given data sample, which is referred to as k-fold cross-validation. When a particular value for K is selected, it can be used instead of K in the reference model, taking K = 10, i.e., 10 times cross-validation.

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Abstract

The invention relates to the technical field of biology, and concretely relates to application of whole blood cell counting in prediction of SARS-CoV-2 infection. A plurality of models are enforced, classification is performed by applying a decision tree, a K-nearest neighbor algorithm, a support vector machine and naive Bayes, the models can predict SARS-CoV-2, AUC of non-hospitalized patients inthe decision tree model can reach 90% at most, and data of comprehensive hospitalized patients in support vector machine model can reach 96%. Data collected from standardized whole blood cell counting is used, and compared with researches using different models in the same data set, the comparison shows that the performance of the support vector machine and the decision-making tree is superior tothat of the models used in public researches, preliminary screening between SARS-CoV-2 positive and negative using biomarkers at the early stage of disease manifestation is carried out, and due to its simplicity and easily measurable parameters, different parameters of whole blood cell counting have huge value and attraction.

Description

Technical field[0001]The present invention relates to the field of biotechnology, and more particularly to whole blood cell counting in predicting SARS-COV-2 infection.Background technique[0002]Since December 2019, COVID-19 virus strains have triggered public health issues. Infection can lead to fever, cough, exhaustion, and moderate to severe respiratory symptoms. If it is very serious, it will lead to death. On March 11th, the World Health Organization announced that the virus broke out.[0003]In order to confirm whether the people of COVID-19 have successfully discouraged SARS-COV-2, the method based on reverse transcribe polymerase chain reaction (RT-PCR) has become the main criteria. However, a comprehensive factor considers that there is not enough tool for the presence of RT-PCR to monitor SARS-COV-2, hindering a large-scale patient study. The accuracy of the conventional test used is 80% compared to the result of the chest CT scan, which also depends on the degree of detoxifi...

Claims

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Application Information

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IPC IPC(8): G01N15/10G06K9/62G06N20/00G16H10/60
CPCG01N15/10G06N20/00G16H10/60G01N2015/1006G06F18/214
Inventor 魏冬青法哈德·胡玛云王恒王艳菁
Owner YANTAI ZHIYI MEDICINE TECH CO LTD