Novel Method for Cloning Variable Domain Sequences of Immunological Gene Repertoire

Abstract

The present invention relates to a non-PCR (polymerase chain reaction) process, particularly a transcription-based amplification method, for amplifying and cloning sequences containing a variable domain sequence such as an immunoglobulin variable domain sequence from the immunological gene repertoire. The present invention contemplates the expression of antibody library in either in an in vivo expression vector or in an in vitro transcription / translation system. Isolation of a gene coding for a receptor having the ability to bind a preselected ligand and receptors produced by the gene isolated by the method is also contemplated.

Description

CROSS-REFERENCES TO RELATED APPLICATIONS[0001]This application claims the benefit of U.S. patent application Ser. No. 10 / 477,907, filed Nov. 13, 2003, which is incorporated herein by reference in its entirety for all purposes.TECHNICAL FIELD[0002]The present invention relates to methods for amplifying and cloning variable region or domain sequences of the immunological genes, generating libraries of immunological gene repertoire and isolating a gene coding for an antigen-combining molecule such as antibody or immunoglobulin.BACKGROUND OF THE INVENTION[0003]A dozen or so monoclonal antibodies have been approved by the Food and Drug Administration (FDA) as human therapeutics including Orthoclone OKT3 for allograft rejection, ReoPro (abciximab) for adjunct treatment of percutaneous coronary intervention (PCI) including balloon angioplasty, atherectomy and stent placement, Rituxan for Non-Hodgkin's lymphoma, Simulet and Zenapax for organ rejection prophylaxis, Remicade for Rheumatoid ar...

AI Technical Summary

Benefits of technology

[0028]In one embodiment, the mRNAs of a tissue or cell of immune system origin, such as blood cells, are used as the source of immunological genes. The mRNAs of the immunoglobulin genes are reversed transcribed by specific VK antisense primers operatively linked with a promoter sequence for a DNA-dependent RNA polymerase such as T7 promoter (the RNA promoter-linked primer). The RNA promoter-linked primer for the VK genes is situated in the conserved region adjacent to the variable domain of the VK genes, such as the J region in the constant region of the kappa light chain. The resulting cDNAs are made into double-stranded (ds) cDNAs by double stranding reactions with sense VK primers situated in the relatively conserved region in the variable region of the VK genes. The ds cDNAs are then transcribed by the DNA-dependent RNA polymerase such as T7 polymerase into hundreds to thousands copies of antisense RNA transcripts. The amplified RNA transcripts can be amplified again. The antisense RNA transcripts are reverse transcribed into sense DNAs (sDNAs) by the sense VK primers, the single stranded sDNAs are made into ds DNAs with the RNA promoter-linked primers. The resulting ds DNAs can be transcribed into hundreds to thousands of copies of RNA transcripts again by the DNA-dependent RNA polymerase. With two rounds of transcription amplification, the original mRNAs of immunoglobulin genes are copied into hundreds of thousands to millions of copies of antisense RNA transcripts complementary to the original sequences. The above process can be repeated or cycled a few more times, if needed. The resulting RNA transcripts can be easily converted into ds DNAs by techniques known in the art and the resulting ds DNAs are ready for further cloning and / or expression of the antigen-combining molecules on in vitro transcription and translation or in an expression vector in a host cell such as a lambda phage.

Problems solved by technology

Secondly, the RNA transcriptional amplification is linear and does not result in preferential amplification, which is a major problem associated with PCR-based amplification reactions.

Thirdly, the RNA transcriptional amplification process can be applied to amplify multiple sequences simultaneously with a capacity of amplifying at least more than ten to twenty sequences at a time in a single reaction, while the PCR-based amplification has limited ability for multiplexing with a typical limit of amplifying less than ten, most often less than five sequences in a single group reaction (Gao et al., supra).

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