Isothermal PCR nucleic acid augmentative method based on dI modified primer and endonuclease V

An isothermal and nucleic acid technology, applied in the field of genetic engineering, can solve problems such as limited length of amplified fragments, failure of target nucleic acid amplification, complicated amplification reaction operation, etc., to achieve convenient simultaneous amplification, improved DNA synthesis speed and efficiency, The effect of high growth rate

Inactive Publication Date: 2008-05-21
SHANGHAI JIAO TONG UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] The defects of the existing isothermal PCR technology mainly include: 1) the amplified product is a double-stranded DNA mixture of different lengths, which needs to be digested with restriction endonucleases to form DNA fragments of uniform length; 2) phi 29 DNA polymerase and Isothermal PCR catalyzed by T7 DNA polymerase can only amplify relatively short circular target nucleic acid template molecules, and often produces non-specific amplification bands; 3) Although isothermal PCR based on loop-structured primers can amplify highly complex line 4) Isothermal PCR based on loop-structured primers requires two pairs of primers, the operation of the amplification reaction is complicated, and the DNA synthesis reaction triggered by any pair of primers fails. Both will cause the failure of target nucleic acid amplification

Method used

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Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0017] The isothermal PCR amplification of the ampicillin resistance gene in embodiment 1pUC18 plasmid

[0018] The target nucleic acid template molecule in this embodiment is plasmid pUC18, the target nucleic acid to be amplified is the ampicillin resistance gene of plasmid pUC18, and the four normal temperature proteins used are phi 29 DNA polymerase, Escherichia coli endonuclease V, Single-stranded DNA-binding protein and helicase of T7 bacteriophage. The specific implementation steps are as follows:

[0019] In the first step, the primer sequence for amplifying the ampicillin resistance gene of plasmid pUC18 was designed and synthesized. The two primers are pUC18-amp-F and pUC18-amp-R respectively. The base sequences of the two primers are as follows:

[0020] pUC18-amp-F: 5' aatattgaaa aaggaagaxt atgagtattc aacatttccg t

[0021] pUC18-amp-R: 5' gagtaaactt ggtctgacxg ttaccaatgc ttaatcagtg a

[0022] Wherein, the symbol X represents a dI modified nucleotide, and the en...

Embodiment 2

[0027] The isothermal PCR amplification of endonuclease IV gene in the chlamydia genome of embodiment 2

[0028] The target nucleic acid template molecule in this embodiment is Chlamydia genomic DNA, the target nucleic acid to be amplified is the endonuclease IV gene of Chlamydia, and the four high-temperature-resistant proteins used are Taq DNA polymerase, the high-temperature-resistant microorganism T.thermophilus Endonuclease V, single-stranded DNA binding protein and helicase. The specific implementation steps are as follows:

[0029] The first step is to design and synthesize primer sequences for amplifying Chlamydia endonuclease IV gene. The two primers are CpendoIV-F and CpendoIV-R respectively. The base sequences of the two primers are as follows:

[0030] CpendoIV-F: 5'agaaaagacc ttgaaattxt atgaaagtac ttcctcctcc c

[0031] CpendoIV-R: 5'aaaagcactt aaaaaactxc ctaactatct ctgttttttg a

[0032] Wherein, the symbol X represents a dI modified nucleotide, and the entire...

Embodiment 3

[0036] Example 3 Isothermal PCR Amplification of Human Defensin α3 mRNA

[0037] The template in this embodiment is the total cDNA of human total RNA reverse transcription, the target nucleic acid to be amplified is the human defensin α3 cDNA gene, and the four normal temperature proteins used are bacteriophage T7 DNA polymerase (combined with Escherichia coli thioredoxin protein), T7 single-stranded DNA binding protein, T7 helicase and Escherichia coli endonuclease V.

[0038] Before using the isothermal PCR of the present invention to amplify the human defensin α3 cDNA gene, it is necessary to prepare human total cDNA in advance through reverse transcription reaction. Reverse transcription reaction composition: 100ul reverse transcription reaction mixture contains 3 micrograms of human total RNA, 1× reverse transcription buffer, 0.5mM dATP, dTTP, dCTP, dGTP, 2μM oligo-dT oligonucleotide primers, 10 units of RNase A inhibitor, 10 units of M-MLV reverse transcriptase. React ...

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Abstract

The invention relates to an isothermal PCR nucleic acid amplification method based on dI modified primer and endonucleaseV. The amplified target nucleic acid primer is completely matched with the template; 1 to 5 dI nucleic acids are on the 10 to 30 site at the 5' end; 10 to 30 nucleic acids are at the downstream of the dI nucleic acids. The reaction components of isothermal PCR comprise dI modified forward primer and reverse primer, target nucleic acid template, four kinds of deoxyribonucleoside triphosphates dATP, dTTP, dCTP and dGTP, DNA polymerase, endonucleaseV, single DNA chain binding protein and helicase. After the initial thermal denaturation and annealing hybridization, the mixture of isothermal PCR carries out the PCR reaction. During the amplification process, the circulation and regeneration of the primer-template compound is realized by endonucleaseV, which induces the DNA synthesis reaction; the single DNA chain binding protein and helicase can improve the efficiency of isothermal PCR. The amplification of the target nucleic acid of the invention does not rely on the thermal cycler; the invention has easy and convenient operation, which can be used for a large scale and high yield amplification of the target nucleic acid.

Description

technical field [0001] The invention relates to a new nucleic acid amplification method, in particular to an isothermal PCR nucleic acid amplification method based on dI modified primers and endonuclease V, which can be used for isothermal amplification of target nucleic acids and belongs to the technical field of genetic engineering. Background technique [0002] Polymerase Chain Reaction (PCR) is a routine molecular biology technique with numerous applications. Conventional PCR is mainly composed of three steps: 1) thermal denaturation of the target nucleic acid template molecule, 2) hybrid annealing between the free primer and the denatured target nucleic acid template molecule, 3) thermostable DNA polymerase catalyzed binding to the target nucleic acid template molecule The primers on the DNA synthesis reaction. The three-step reaction of conventional PCR is repeated in cycles to achieve exponential multiple amplification of the target nucleic acid. Routine PCR require...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/09
Inventor 刘喜朋刘建华
Owner SHANGHAI JIAO TONG UNIV
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