Firefly luciferase and encoding gene and obtaining method thereof
A technology of luciferase and firefly, which is applied in the field of encoding genes and the acquisition of the enzyme, can solve the problems of not being able to meet high temperature applications and poor thermal stability
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Embodiment 1
[0054] Embodiment 1 computer-aided design of highly stable mutation site
[0055] Download the coordinate file 1BA3 of luciferase in PDB format from the PDB database (http: / / www.rcsb.org / pdb / home / home.do), and use DeepView 4.1 software to process the 1BA3 file: complete missing residues and atoms to remove ligand molecules. Perform molecular dynamics simulation on the processed files. All simulations are carried out under the conditions of constant temperature (300K), constant pressure (atmospheric pressure), and force field using Gromos 96.1 (53A6), and the final simulation time is 10ns. Select the last 2ns (9-10ns) of the protein molecular dynamics trajectory, and calculate the RMSF (Root Mean Square Fluctuation) value of each amino acid of the protein. This value reflects the conformational status of the amino acid in the molecular dynamics simulation trajectory, and the higher the value, the more unstable the conformation. Through analysis, the region where the active si...
Embodiment 2
[0056] Embodiment 2 contains the construction of firefly luciferase gene expression vector
[0057] 1. Primer Design
[0058] With the nucleotide sequence of the plasmid pGL2-control vector (purchased from Promega) containing the North American firefly (P.Pyralis) luciferase gene, combine the multiple cloning site of the plasmid pET28a (purchased from Novagen) with the restriction of the Luc gene Design primers for endonuclease sites, as follows:
[0059] Primer luc+:5-CGGGATCCATGGAAGACGCCAAAAAC-3
[0060] Primer luc-:5-CCCAAGCTTTTACAATTTGGACTTTCCGC-3
[0061] Among them, CG in the upstream primer is the protective base, GGATCC in the upstream primer is the restriction site of BamHI, CCC in the downstream primer is the protective base, and AAGCTT is the Hind III endonuclease site. After the properties and parameters of the primers were qualified by oligo6 software, Beijing Aoke Dingsheng Biotechnology Co., Ltd. was entrusted to synthesize the primers.
[0062] 2. PCR ampli...
Embodiment 3Q
[0070] Example 3 Quick Change method site-directed mutagenesis firefly luciferase gene (Luc)
[0071] Rapid site-directed mutagenesis is to directly introduce mutations to amino acids in specific double-stranded DNA by PCR. It is completed in one step and does not require subcloning. This is currently the simplest site-directed mutagenesis method. The principle is: a circular plasmid is used as a template, and a pair of primers containing mutation points are used to amplify. The product is a complete unmethylated plasmid. Because the template plasmid is a methylated plasmid extracted from E. coli, it can The DpnⅠ enzyme digestion method was used to remove the template, and only the newly amplified mutant plasmid remained in the final product. The product could be directly transformed into competent cells of Escherichia coli, and positive clones were selected for sequencing verification. The process is as Figure 4 shown.
[0072] 1. Primer Design
[0073] The mutant primers o...
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