Gene chips and kits for detecting foot-and-mouth disease virus, swine fever virus and porcine reproductive and respiratory syndrome virus
A technology for respiratory syndrome and foot-and-mouth disease virus, which is applied in the directions of microorganism-based methods, biochemical equipment and methods, and microbial determination/inspection, etc. It can solve the problems of stability and sensitivity test, etc., to achieve the effect of good clinical application prospect, rapid detection and high sensitivity.
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Embodiment 1
[0073] Embodiment 1 Detection method of the present invention
[0074] 1. Materials and instruments
[0075] The same experimental materials and instruments as mentioned above.
[0076] 2. Experimental method
[0077] 2.1 Design and synthesis of PCR primers and detection probes
[0078] Log in to GenBank to obtain the gene sequences of representative strains of FMDV, CSFV, and PRRSV main genotypes (serotypes), use the MegAlign module of DNAStar software to perform homology analysis, select conserved genes as detection target regions, and use Oligo7.0 The software designs amplification primers and oligonucleotide probes. When labeling samples, the downstream primers are primers modified by Cy3 at the 5' end; the 5' end of the oligonucleotide probe is added with a Poly T15 linker and aminated. The primer sequences are shown in Table 1, and the oligonucleotide probes are shown in Table 2. After Blast comparison, they were sent to Shanghai Sangong for synthesis.
[0079] Tabl...
Embodiment 2
[0165] Embodiment 2 specificity test
[0166] 1. Test method
[0167] Detection of porcine circovirus (PCV-2), porcine parvovirus (PPV), pseudorabies virus (PRV), porcine Japanese encephalitis virus (JEV) and porcine epidemic diarrhea virus (PEDV) by multiplex asymmetric RT-PCR , porcine transmissible gastroenteritis virus (TGEV), bovine viral diarrhea / mucosal disease virus (BVDV) nucleic acid template amplification markers, and the amplified products were detected with the gene chip prepared in Example 1 respectively to evaluate its specificity.
[0168] The method of multiplex RT-PCR amplification is as follows:
[0169] Extract the nucleic acid of the sample to be tested (use the RNA column extraction kit and DNA column extraction kit of Beijing Century Yuanheng Company to extract the nucleic acid of the corresponding virus), multiplex RT-PCR amplification, and the reaction system is: use One Step PrimeScriptTMRT-PCR Kit Amplification kit, Buffer III (2x) 12.5 μL, Enzyme ...
Embodiment 3
[0176] Embodiment 3 sensitivity test
[0177] 1. Test method
[0178] According to the method of Example 1, the recombinant plasmid PMD3D (8.34 × 10 9 copies / μL), PMD-W (1.06×10 9 copies / μL), PMD-C (9.02×10 9 copies / μL), PMDP (3.76×10 9 copies / μL), PMDHP (3.65×10 9 copies / μL) were diluted 10×, amplified by multiple asymmetric RT-PCR, and the amplified products were detected by gene chip to evaluate the sensitivity of the detection gene chip system.
[0179] The multiplex RT-PCR amplification method and gene chip detection method are the same as in Example 2.
[0180] 2. Results
[0181] Adopt the method of the present invention to detect plasmid PMD3D, the minimum detection concentration can reach 8.34 * 10 2 copies / μL, test results see Figure 20 .
[0182] Adopt the method of the present invention to detect plasmid PMD-W, the minimum detection concentration can reach 1.06 * 10 2 copies / μL, test results see Figure 21 .
[0183] Adopt the method of the present inv...
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