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Real-time fluorescence PCR method for detecting multiple genes or different targets with primer associated universal probe

A general-purpose probe, real-time fluorescence technology, used in biochemical equipment and methods, microbial assay/inspection, recombinant DNA technology, etc. Increase the curve and other problems to achieve the effect of avoiding poor detection curve, simple production process and reducing reagent cost

Inactive Publication Date: 2015-03-11
AUTOBIO DIAGNOSTICS CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

When detecting more than 6 targets in a single tube, more than 2 targets need to share one channel, and these targets need to be labeled with the same fluorescent dye corresponding to each probe, and each probe has a certain background signal, and the background signal of multiple probes is accumulated , it will appear that the background signal of this channel is too high, which seriously affects the linearity of the amplification curve, and the synthesis of multiple probes is expensive
[0008] Using the fluorescent dye melting curve analysis method to identify the PCR product and analyze the target type in the product, as described in the patent application number CN102559868A, using the closed-tube analysis technology, which reduces the risk of product contamination and detection cost, but prolongs the analysis time , high technical requirements, highly subjective results
[0009] To sum up, although there are a variety of detection technologies for nucleic acid sequence recognition and quantification at home and abroad, there are still certain limitations in industrial production cost control, process simplicity, and technical compatibility in single and multiple detection. , so it is necessary to develop a general method that can use the same probe for real-time fluorescence detection of different targets

Method used

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  • Real-time fluorescence PCR method for detecting multiple genes or different targets with primer associated universal probe
  • Real-time fluorescence PCR method for detecting multiple genes or different targets with primer associated universal probe
  • Real-time fluorescence PCR method for detecting multiple genes or different targets with primer associated universal probe

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Experimental program
Comparison scheme
Effect test

Embodiment 1

[0037] Application of the primer-associated universal probe system in the present invention in the detection of HPV18.

[0038] Experimental design: compare the sensitivity of the primer-associated universal probe detection system of the present invention with the conventional fluorescent quantitative PCR system in samples with high, medium and low values ​​of HPV18.

[0039] Primer design: Primers were designed according to the conserved sequence of HPV18 type L1 gene on NCBI gene bank (http: / / www.ncbi.nlm.nih.gov). See attached table 1 for primer sequences.

[0040] Compared with the conventional fluorescent quantitative PCR system: 1*PCR buffer, 2.5mM magnesium ion, 0.5U Taq DNA polymerase, 200μM dNTP, the amount of upstream and downstream primers (SEQ ID NO 1-2) is 200nM, and the detection probe FAM BHQ1 The amount of marker (SEQ ID NO 3) was 100 nM.

[0041] Primer-associated universal probe detection system: 1*PCR buffer, 2.5mM magnesium ion, 0.5U Taq DNA polymerase, 2...

Embodiment 2

[0046] The application of the primer-associated universal probe system in the present invention in the detection of HCV RNA.

[0047] Experimental design: compare the sensitivity of the primer-associated universal probe detection system of the present invention with the conventional fluorescence quantitative PCR system in serum samples with high, medium and low HCV RNA values.

[0048] Primer design: Primers were designed according to the HCV 5'UTR sequence on NCBI gene bank (http: / / www.ncbi.nlm.nih.gov). See attached table 2 for primer sequences.

[0049] Compared with the conventional fluorescent quantitative PCR system: 1*RT-PCR one-step buffer, 2.5mM magnesium ion, 10U M-MLV reverse transcriptase, 0.5U Taq DNA polymerase, 200μM dNTP, upstream and downstream primers (SEQ ID NO 7 -8) The amount is 200nM, and the amount of the detection probe FAM BHQ1 label (SEQ ID NO 9) is 100nM.

[0050] Primer-associated universal probe detection system: 1*PCR buffer, 2.5mM magnesium...

Embodiment 3

[0055] Application of the primer-associated universal probe system in the present invention for multiple fluorescence quantitative detection of HPV high-risk type 14.

[0056] Experimental design: comparing HPV high-risk 14 types (HPV16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66, 68) samples, the primer-associated universal probe detection system of the present invention Compared with the sensitivity of conventional fluorescent quantitative PCR system; the detection specificity of this system was verified by positive samples of HPV low-risk common types (HPV6, HPV11).

[0057] Primer design: Primers were designed according to the conserved sequence of HPV high-risk type 14 L1 gene on NCBI gene bank (http: / / www.ncbi.nlm.nih.gov), and the primer sequences are shown in Attached Table 3.

[0058] Compared with the conventional fluorescent quantitative PCR system: 1*PCR buffer, 2.5mM magnesium ion, 0.5U Taq DNA polymerase, 200μM dNTP, the amount of upstream and downstream prim...

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Abstract

The invention discloses a real-time fluorescence PCR method for detecting multiple genes or different targets with a primer associated universal probe. The method comprises the following steps: firstly, relying on a composite sequence primer with a special structure, and introducing a combined position of a universal probe and a universal amplification primer at the tail end of an amplified product in the process of initial amplification so as to realize different targets; using the same probe for real-time fluorescence detection. The method has the advantage that the production process is simple and easy to control, the absolute usage amount of the probe is decreased, and the reagent cost is reduced. In a single detection, different items can share one probe, so that the production process is simplified and is convenient to control. In multiple detections, different targets realize specific real-time fluorescence detection by using the same probe without different probes, so that the absolute usage amount of the probe is directly reduced, the problems of poor detection curves and low sensitivity caused by a high multi-probe fluorescent background are solved, and besides, the reagent cost is also reduced by using the same probe.

Description

Technical field [0001] The present invention involves real -time fluorescent PCR amplification detection methods, especially the real -time fluorescence PCR method that uses a primer to detect multiple genes or different targets. Background technique [0002] Polymerase chain reaction (PCR) is an in vitro nucleic acid amplification technology developed in the mid -1980s. It has outstanding advantages such as sensitivity, high yields, fast, simple, repetitive, easy to automate, and can be in it.A test tube will expand to 100,000 or even one million times the purpose of the purpose of the purpose or a DNA fragment to be studied in a few hours.The basic principles of PCR technology are similar to the natural replication process of DNA, and its specificity depends on the oligonucleotide primer that complement each other at both ends of the target sequence.PCR is composed of degeneration-annealing-extended three basic reactions steps: ① Draphic degeneration of template DNA: After the ...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6844C12Q2537/143C12Q2561/101C12Q2561/113
Inventor 高利飞白宪鹤孟浪李桂林付光宇吴学炜苗拥军
Owner AUTOBIO DIAGNOSTICS CO LTD
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