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Multiple PCR detection kit for three bacterial seed-borne diseases and special primer for kit as well as multiple PCR detection method

A bacterial leaf spot and bacterial technology, which is applied in biochemical equipment and methods, microorganism-based methods, and microbial determination/inspection, etc. 3. Detection has limitations and other problems, to achieve the effect of saving detection cost and time, saving detection time and reducing detection cost

Active Publication Date: 2015-06-24
YUNNAN AGRICULTURAL UNIVERSITY
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

In 2000, bacterial fruit spot disease of thick-skinned muskmelons occurred on a large scale in Bayannaoer League, Inner Mongolia, with an average yield reduction of 46%, and the commercial melon rate was only 1 / 3; in the winter of 2002, melon bacterial fruit spot disease The seedling destruction rate that causes is also up to 30%~80%, causes serious economic loss to melon grower
However, the detection methods described in the above-mentioned patents are only aimed at the detection of Clavibacter michiganensis subsp. michiganensis and Acidovorax citrulli respectively, and cannot detect Clavibacter michiganensis subsp. michiganensis at the same time. , bacterial leaf spot of tomato (Pseudomonas syringae pv.

Method used

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  • Multiple PCR detection kit for three bacterial seed-borne diseases and special primer for kit as well as multiple PCR detection method
  • Multiple PCR detection kit for three bacterial seed-borne diseases and special primer for kit as well as multiple PCR detection method
  • Multiple PCR detection kit for three bacterial seed-borne diseases and special primer for kit as well as multiple PCR detection method

Examples

Experimental program
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Effect test

Embodiment 1

[0080] Example 1 The design of the special primer Xj for the rapid detection of tomato canker bacterium of the present invention and the detection of tomato canker bacterium by using the pair of special primers Xj using conventional molecular biology methods.

[0081] (1) Design and synthesis of special primer Xj for detection of tomato canker bacterium

[0082] The special primer Xj for detecting tomato canker sore is based on the 16S rDNA gene fragment in the chromosome genome of tomato canker sore, and DNAMAN6.0 is used for homology analysis to determine the highly conserved region, and then the Primer 6.0 primer design software is used to design specific primers. Numbering is special primer Xj, it is made up of special primer Xj upstream primer and special primer Xj downstream primer, the base sequence of described special primer Xj upstream primer is as shown in SEQ ID NO: 1, described special primer Xj downstream The base sequence of the primer is shown as SEQ ID NO: 2, ...

Embodiment 2

[0100] Example 2 Design of the special primer Dc for rapid detection of tomato bacterial leaf spot of the present invention and the detection of tomato bacterial leaf spot by using the pair of special primers Dc using conventional molecular biology methods.

[0101] (1) Design and synthesis of special primer Dc for detection of tomato bacterial leaf spot

[0102] The special primer Dc for the detection of tomato bacterial leaf spot is based on the 23SrDNA gene fragment in the chromosome genome of tomato bacterial leaf spot, using DNAMAN6.0 for homology analysis to determine the highly conserved region, and then using Primer 6.0 primers Design software, design specific primer, it is numbered as special primer Dc, it is made up of special primer Dc upstream primer and special primer Dc downstream primer, the base sequence of described special primer Dc upstream primer is as SEQ ID NO: 3 As shown, the nucleotide sequence of the downstream primer of the special primer Dc is shown in...

Embodiment 3

[0106] Example 3 is the design of the special primer At for rapid and accurate detection of melon bacterial fruit spot disease of the present invention and the detection of melon bacterial fruit spot disease by using the special primer At using conventional molecular biology methods.

[0107] (1) Special primer At and its design and synthesis

[0108] The special primer At for detecting the bacterial fruit spot of melons is based on the hrpB2 gene fragment in the chromosome genome of the bacterial fruit spot of melons, using DNAMAN6.0 for homology analysis to determine the highly conserved region, and then using Primer 6.0 primer design software , design specific primers, which are numbered as special primers At, which are composed of special primers At upstream primers and special primers At downstream primers, and the base sequence of the special primers At upstream primers is shown in SEQ ID NO: 5 , the nucleotide sequence of the downstream primer of the special primer At i...

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PUM

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Abstract

The invention discloses a multiple PCR detection kit for three bacterial seed-borne diseases and a special primer for the kit as well as a multiple PCR detection method. The invention provides special primers aiming at the canker pathogens of tomato, the bacterial leaf spot pathogens of the tomato and the bacterial fruit spot pathogens of melons; the target product fragment of the special primer for detecting the canker pathogens of the tomato is 1086bp; the target product fragment of the special primer for detecting the bacterial leaf spot pathogens of the tomato is 491bp; and the target product fragment of the special primer AT for detecting the bacterial fruit spot pathogens of the melons is 290bp. The invention also provides a multiple PCR optimal reaction system for the three pathogens and reaction conditions. The multiple PCR detection kit is capable of quickly and simultaneously detecting the canker pathogens of the tomato, the bacterial fruit spot pathogens of melons and the bacterial leaf spot pathogens of the tomato without cloning, sequencing and sequence alignment, and is high in specificity, quick and accurate; and as a result, the detection cost and the detection time are saved, and the limitation of the single reaction is solved.

Description

technical field [0001] The present invention relates to the technical field of molecular biology detection of three kinds of plant pathogens, in particular to Clavibacter michiganensis subsp.michiganensis, tomato bacterial leaf spot (pseudomonas syringae pv.tomato) and melon bacterial fruit spot ( Acidovorax citrulli) multiplex molecular biology detection method. Background technique [0002] my country is the fourth largest importer and fifth largest exporter of agricultural products. However, with the further expansion of foreign trade, the transportation of plants and their products has become increasingly frequent, especially the most dangerous seeds. This has become a very important and urgent problem that endangers my country's biodiversity, ecological environment and national economy. The number and variety of alien invasive organisms are large. Already 529 species of alien organisms have invaded 34 provincial-level administrative regions in my country, leading to spe...

Claims

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Application Information

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IPC IPC(8): C12Q1/68C12Q1/04C12N15/11C12R1/01
CPCC12Q1/686C12Q1/689C12Q2600/16C12Q2537/143C12Q2565/125
Inventor 刘雅婷王金龙岳凯李小林谷安宇
Owner YUNNAN AGRICULTURAL UNIVERSITY
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