Nest-type fluorescent PCR detecting primer, probe composition and kit for donkey material and bovine-derived material in donkey-hide gelatin, detecting method and application

A technology for detecting primers and bovine origin, which is applied in biochemical equipment and methods, recombinant DNA technology, and microbial measurement/inspection, etc. High degree of destructiveness, improved detection sensitivity, and improved amplification efficiency

Inactive Publication Date: 2016-07-13
BIOTECH RES CENT SHANDONG ACADEMY OF AGRI SCI
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  • Abstract
  • Description
  • Claims
  • Application Information

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Problems solved by technology

However, there are also disadvantages such as long time consumption, easy contamination and false positives, that is, the whole process takes about 5 hours from the beginning of PCR amplification, and the test results require electrophoresis and gel imaging systems to see the results, multiple tube opening operations, and the possibility of cross-contamination Big
[0005] In addition, because donkey-hide gelatin undergoes multiple processes of high-temperature decoction, the linear genomic DNA is broken into small fragments and even degraded. Although the tolerance of circular mitochondrial DNA to high temperature is stronger than that of linear genomic DNA, after intensive processing DNA will be damaged to varying degrees. How to solve the problem of degrading DNA has become a major bottleneck in detecting the authenticity of donkey-hide gelatin based on DNA detection technology.
Chinese patent (CN104988231.A) uses semi-nested PCR technology to identify the authenticity of donkey-hide gelatin, and the amplified fragment is about 700bp. For the deeply processed gelatinous traditional Chinese medicine, the DNA has been highly damaged, and it is difficult to successfully amplify large fragments. Two rounds of PCR amplification is not only time-consuming, but the operation of opening the tube can easily cause cross-contamination, resulting in false positives and low accuracy of the results. Therefore, the traditional PCR detection method can no longer meet the current requirements for authenticity detection of donkey-hide gelatin.

Method used

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  • Nest-type fluorescent PCR detecting primer, probe composition and kit for donkey material and bovine-derived material in donkey-hide gelatin, detecting method and application
  • Nest-type fluorescent PCR detecting primer, probe composition and kit for donkey material and bovine-derived material in donkey-hide gelatin, detecting method and application
  • Nest-type fluorescent PCR detecting primer, probe composition and kit for donkey material and bovine-derived material in donkey-hide gelatin, detecting method and application

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Experimental program
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Effect test

Embodiment 1

[0079] DNA extraction based on donkey-hide gelatin samples: using the method disclosed in the patent 201410317118.7 (a kit for quickly extracting DNA from donkey-hide gelatin and its extraction method), the steps will not be repeated, and the purity of the extracted genomic DNA is determined by ultraviolet spectrophotometer and concentration. Determination of OD 260 / OD 280 The values ​​are all about 1.8-1.9, and the concentration is above 10ng / μl, indicating that the DNA is of high purity and moderate concentration, which meets the requirements of PCR amplification. .

[0080] 1. Selection of target genes and design of primers: Compared with the genome, the copy number of mitochondria in tissues is higher, and the degree of damage of donkey-hide gelatin after deep processing is relatively small, so the mitochondrial 16SrDNA gene is preferred. The outer primers and inner primers are designed for donkey and cattle, and the amplified fragments are small, making it easier for ...

Embodiment 2

[0085] Example 2 Kit Specificity Verification

[0086]Using the detection kit provided by the present invention, the genomic DNA is extracted from animal skins or fresh tissues such as cattle, pigs, horses, donkeys, camels, yaks, goats, sheep, rabbits, fish, chickens, ducks, minks and foxes as templates, Perform multiple nested real-time fluorescent PCR detection according to the above method to verify the specificity of this kit. The test results are shown in Table 3. Only the genomic DNA of donkey and cow was detected, and the rest of the animal-derived DNA was not detected, indicating that the detection method of this kit has good specificity.

[0087] Table 3 specificity verification

[0088]

[0089]

Embodiment 3

[0090] Embodiment 3 Sensitivity experiment

[0091] Quantify donkey and bovine genomic DNA to 5×10 -2 ng / μl, 5pg / μl and 0.5pg / μl, 0.05pg / μl, 0.005pg / μl each PCR reaction were respectively added different concentrations of donkey and cow DNA as a template, the addition amount was 2μl, that is, the DNA content was 0.1ng, 0.01ng, 1pg, 0.1pg, 0.01pg, amplified according to the above PCR system and detection method, see the results Figure 4 with Figure 5 , as can be seen from the figure, the detection limit of the present invention is 0.1pg, and the detection sensitivity reaches the picogram level, which is 1000 times higher than other detection sensitivities.

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Abstract

The invention provides a nest-type fluorescent PCR detecting primer, a probe composition and a kit for a donkey material and a bovine-derived material in donkey-hide gelatin, a detecting method and application and relates to the technical field of molecular biology.By the utilization of the primer, the probe composition and the multi-nested fluorescent PCR detecting kit, the donkey material and the bovine-derived material in the donkey-hide gelatin can be rapidly identified.For trace DNA or degraded DNA in the donkey-hide gelatin, the probability of effectively recognizing a target point is greatly increased for the primer and probe through nest-type PCR and a small-fragment amplification technology, and therefore detecting accuracy and sensitivity are greatly improved; two-step PCR amplification is performed in the same system, and the detecting method has the advantages that tube-closed operation is achieved, the pollution rate is low, detecting sensitivity is high, specificity is good, accuracy is high, and the flux is large.

Description

technical field [0001] The invention relates to the technical field of detection of animal origin of gelatinous traditional Chinese medicine, in particular to a nested fluorescent PCR detection primer, probe composition, kit, detection method and application of donkey-hide gelatin and bovine origin, belonging to molecular biology technology field. Background technique [0002] Donkey-hide gelatin is a solid gelatin made from the donkey skin of the equine animal, which is boiled and concentrated. It is originally produced in the Pandong-E region of Shandong Province. It was first recorded in "Shen Nong's Materia Medica". , has a history of nearly three thousand years. Donkey-hide gelatin blood-tonifying holy medicine, tastes sweet and flat, enters the lung, liver, and kidney meridian, has the functions of nourishing blood and stopping bleeding, nourishing yin and moistening dryness, etc. Power, applicable to a wide range of people. Li Shizhen's "Compendium of Materia Medic...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12N15/11
CPCC12Q1/6848C12Q1/6876C12Q2600/16C12Q2600/166C12Q2537/143C12Q2549/119C12Q2563/107C12Q2545/113
Inventor 步迅张全芳刘艳艳范阳阳
Owner BIOTECH RES CENT SHANDONG ACADEMY OF AGRI SCI
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