Noninvasive prenatal biological information detection and analysis method
A biological information detection and analysis method technology, applied in the field of non-invasive prenatal biological information detection and analysis, can solve the problems of inaccurate regression results, incompatible judgment methods, slow bin method, etc., to ensure robustness and accuracy The effect of stability, sensitivity of Z value and accurate results
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Embodiment 1
[0068] Embodiment 1 Construction of normal reference set
[0069] 1. Sample selection
[0070] A total of 150 pregnant women with gestational weeks greater than 10 weeks and no chromosomes in karyotype analysis were selected, and their peripheral blood was extracted for genome resequencing according to a high-throughput method.
[0071] 2. Data filtering
[0072] The off-machine data is subjected to quality control processing, and the off-machine 36SE reads are reads filtered to remove reads with empty connectors, reads containing N and low-quality reads, and retain the remaining reads.
[0073] 3. The number of reads is compared to locate the position of the sequence
[0074] Align the filtered reads with a short sequence alignment tool, and keep the reads on the non-repeated alignment and unique alignment.
[0075] 4. Statistical comparison position and GC content
[0076] Calculate the Uniq Mapped reads and GC content of each chromosome of each sample, calculate the tot...
Embodiment 2
[0083] Detection when the number of samples to be tested (same batch)≤10 in embodiment 2
[0084] In this embodiment, the number of samples to be tested = 5 is used as an example to illustrate the detection and analysis method of the present invention.
[0085] The samples were collected from the society and a hospital in Sichuan, and the results were verified in parallel by a proton platform approved by the state. Some samples were also followed up with fetuses after birth for confirmation.
[0086] 1. The peripheral blood of 5 pregnant women to be tested was collected for plasma separation, plasma cell-free DNA extraction, and library sequencing.
[0087] 2. Through comparison, filtering, statistics and homogenization, the following table lists the results of 5 blood samples after homogenization:
[0088]
[0089] 3. Use the calculated parameters of the normal reference set to correct and optimize the above NCR:
[0090] sample number
chr13(%)
chr18(%)...
Embodiment 30
[0102] Example 30
[0103] In this embodiment, the number of samples to be tested = 26 is used as an example to illustrate the detection and analysis method of the present invention.
[0104] 1. At the same time, the peripheral blood of 26 pregnant women to be tested was collected for plasma separation, plasma cell-free DNA extraction, and library sequencing.
[0105] 2. Through comparison, filtering, statistics and homogenization, the following table lists the results of 26 blood samples after homogenization:
[0106]
[0107]
[0108] 3. Calculate the corrected NCR mean value of the sample to be tested, and the corrected NCR mean value of SD, Slope and GC:
[0109]
[0110]
[0111] 4. Use the calculated parameters of the reference set to be tested to correct and optimize the above NCR.
[0112] sample number
chr13(%)
chr18(%)
chr21(%)
chr23(%)
chr24(%)
A16...
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