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Gene saturation mutation library and its construction method and application

A construction method and gene technology, applied in the field of gene saturation mutation library and its construction, can solve the problems of cumbersome steps, low mutation efficiency of multiple bases, inability to achieve target gene sequence detection, etc., and achieve the effect of high mutation success rate.

Active Publication Date: 2020-02-11
TIANJIN INST OF IND BIOTECH CHINESE ACADEMY OF SCI
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0003] However, although error-prone PCR can randomly introduce multiple base mutations into the target gene at one time, its randomness also limits the mutation efficiency of this method, for example, some sites are repeated in multiple rounds of mutation However, the sequence in some regions has not been mutated, and the number of mutated bases in each round is also different, which makes it almost impossible to achieve a comprehensive exploration of the target gene sequence in a limited number of experiments
On the other hand, the various site-directed mutagenesis methods currently used can only achieve mutations of 1-3 adjacent bases in a single round of experiments, while multi-point mutations require that the interval between each mutation site be tens to hundreds More than one base pair, and usually requires multiple PCR reactions in series to achieve the ultimate mutation purpose
These methods are inefficient and cumbersome for mutations of multiple bases arranged consecutively in the specified sequence, and have poor compatibility with long-sequence DNA

Method used

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  • Gene saturation mutation library and its construction method and application
  • Gene saturation mutation library and its construction method and application
  • Gene saturation mutation library and its construction method and application

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0054] The natural active PR can absorb green light in a certain wavelength range due to the combination of trans-retinal, so that the bacteria containing it have different degrees of red or orange. 5 genes related to the PR gene (750bp, sequence shown in SEQ ID No.6) and retinal synthesis-crtE (909bp, sequence shown in SEQ ID No.1), crtB (930bp, sequence shown in SEQ ID No.1) ID No.2), crtI (1479bp, sequence as shown in SEQ ID No.3), crtY (1149bp, sequence as shown in SEQ ID No.4) (Genbank: 90087) and β-diox (1701bp, sequence as shown in Shown in SEQ ID No.5, Genbank: AF271298) were all constructed into the pACYCDuet-1 vector (4008bp, purchased from Merck Company), and the recombinant plasmid EBPA with a total length of 10.804kb was obtained (spectrum as shown in figure 2 (A) shown). Such as image 3 As shown, the DNA sequence of the target gene PR was divided into 62 groups with each 12bp as a group, and the EBPA recombinant plasmid was used as a template to design satura...

Embodiment 2

[0056] PR gene (750bp) and 5 genes related to retinal synthesis - crtE (909bp), crtB (930bp), crtI (1479bp), crtY (1149bp) (Genbank: 90087) and β-diox (1701bp, Genbank: AF271298) were all constructed into the pETDuet-1 vector (5420bp, purchased from Merck Company), and the recombinant plasmid EBPP with a total length of 12.188kb was obtained (the map is shown in figure 2 (B) shown). Using the EBPP recombinant plasmid as a template, the image 3 The numbers in the PR sequence are 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 27, 28, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 47, 48, 51, 52, 53, 54, 55, 56 sequences (40 groups in total) design saturation mutation primers for saturation mutation Library construction.

[0057] The sequences of the mutation primers are shown in Table 1:

[0058] Table 1

[0059]

[0060]

[0061]

[0062]

[0063]

[0064] The reaction system was EBPP plasmid 80ng, forward mutation primer 150nM, rever...

Embodiment 3

[0068] Example 1 application of the number prepared by the present invention is 26, 29, 57 and 58 and embodiment 2 application of the number prepared by the present invention is 9, 15, 19, 24, 27, 45, 48 and 55 of each group of overnight culture The number of clones on the plate was more than 500, and 20 clones were randomly selected for sequencing. The mutation success rate is shown in Table 2. Among them, the "number of effective sequencing samples" refers to the total number of samples with successful sequencing reactions among the 20 samples sent for testing. "Number of mutants" refers to the total number of different mutant sequences obtained in the samples with successful sequencing reactions. If multiple samples have the same mutant sequence, only one sequence is recorded. The average mutation rate of EBPA is 76.6%, and EBPP The average mutation rate was 85.8%. Since the number of clones grown on the plates cultured overnight in the control group was less than 50, for t...

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Abstract

The invention relates to the technical field of biology, in particular to a gene saturation mutagenesis library as well as a construction method and application thereof. The construction method of the continuous multipoint saturation mutagenesis library in long-sequence DNA is suitable for high-throughout protein functional screening; annular double-helix DNA plasmid containing a gene of expressing a target protein is taken as a template; a pair of positive and negative mutation primers with sequences completely complementary reversely are adopted; and saturation mutagenesis of a plurality of basic groups which are continuously arranged in the long-sequence DNA can be realized by one-step reaction through polymerase chain type reaction; and the gene saturation mutagenesis library has the characteristics of being simple, quick and high in mutagenesis success rate, and can be used to realize quick screening positioning and efficient mutagenesis modifying on protein functional sites on amino acid level.

Description

technical field [0001] The invention relates to the field of biotechnology, in particular to a gene saturation mutation library and its construction method and application. Background technique [0002] Protein modification and screening technologies are widely used in heterologous expression of natural genes, optimization of protein drugs such as vaccines and antibodies, artificial synthesis of cell factories and even artificial life forms, and are of great significance to human health and social development. In the research and engineering of protein function, the key amino acid sites that affect protein function must be determined first, and the engineered protein with desired function and activity can be obtained through multiple rounds of mutation and screening of these sites. The usual strategy is to use multiple rounds of error-prone PCR to randomly mutate the target gene, and initially screen out some suspicious sites. Subsequently, further exploration around the su...

Claims

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Application Information

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Patent Type & Authority Patents(China)
IPC IPC(8): C12N15/10C40B50/06C40B40/08
CPCC12N15/1031C40B40/08C40B50/06C12Q2531/113
Inventor 冯淼田会娟王璐王丽娜田敬东
Owner TIANJIN INST OF IND BIOTECH CHINESE ACADEMY OF SCI
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